(4)
OTHER.mut
(6)
PIWI.ip
(1)
PIWI.mut
(1)
TDRD1.ip
(32)
TESTES

Sense strand
CCCCAATCTGCACTCAAGTTGCATCCTCTCTAGGAAAAAAGGAAGACAAGGTAGGCAAAGTCAGTAAAGAACACCATGTTTTACACAGTGAGCACGAGACGTCTTCCAAGATGAGAGCACTTACAAGGTCTGCAGGCATCACAAGGCTCCTCAGAGAGGACCAATCAAAGACCCAAGGAAGTACCCAAGAGAGGGGTTTCAGTGGGGCTGGAGAGTGGGAGCTGGAAAGCTTGGCAGGGCTGGTGTGGGC
.................................................((.((((...(((.((..(((((.....)))))..)).((....))..))))))).))...............................................................................................................................................
..............................................47..........................................................107.............................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR037900(GSM510436)
testes_rep1. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
..............................TAGGAAAAAAGGAAGACAAGGTAGGCA................................................................................................................................................................................................. 27 1 10.00 10.00 3.00 2.00 - - - - - 1.00 - - 1.00 3.00 - - - - - - - - - - - - - - - - - - - -
..............................TAGGAAAAAAGGAAGACAAGGTAGGCAAA............................................................................................................................................................................................... 29 1 8.00 8.00 1.00 - - 3.00 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
............................................................................TGTTTTACACAGTGAGCACGAGACGTC................................................................................................................................................... 27 1 5.00 5.00 1.00 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - 1.00
..............................TAGGAAAAAAGGAAGACAAGGTAGGCAAAGT............................................................................................................................................................................................. 31 1 4.00 4.00 - - - - 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..............................TAGGAAAAAAGGAAGACAAGGTAGGC.................................................................................................................................................................................................. 26 1 3.00 3.00 1.00 - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................TTACAAGGTCTGCAGGCATCACAAGGCT...................................................................................................... 28 1 2.00 2.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGAGAGCACTTACAAGGTCTGCAGGCA................................................................................................................ 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................TACACAGTGAGCACGAGACGTCTTCC............................................................................................................................................... 26 1 2.00 2.00 - - - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................TCCAAGATGAGAGCACTTACAAGGTCT....................................................................................................................... 27 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..............................TAGGAAAAAAGGAAGACAAGGTAGGCAA................................................................................................................................................................................................ 28 1 2.00 2.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................TGTTTTACACAGTGAGCACGAGACGTCTT................................................................................................................................................. 29 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................TTACAAGGTCTGCAGGCATCACAAGGC....................................................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TACAAGGTCTGCAGGCATCACAAGGCTC..................................................................................................... 28 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TAGGAAAAAAGGAAGACAAGGTAGG................................................................................................................................................................................................... 25 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
........................CCTCTCTAGGAAAAAAGGAAGACAAGGTc..................................................................................................................................................................................................... 29 c 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................TACACAGTGAGCACGAGACGTCTTCCAA............................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................TAGGCAAAGTCAGTAAAGAACACCATGTT.......................................................................................................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................GAAAAAAGGAAGACAAGGTAGGCAAAGT............................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................TAGGAAAAAAGGAAGACAAGGTAGGCAAAtt............................................................................................................................................................................................. 31 tt 1.00 8.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................TACACAGTGAGCACGAGACGTCTTCCAAt............................................................................................................................................ 29 t 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................GAGAGGACCAATCAAAGACCCAAGGAAG..................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...........................................................................................................................................................GAGGACCAATCAAAGACCCAAGGAAGTACC................................................................. 30 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TAGGAAAAAAGGAAGACAAGGTAGGaa................................................................................................................................................................................................. 27 aa 1.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................GAGAGGACCAATCAAAGACCCAAGGAAGT.................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................TCAGAGAGGACCAATCAAAGACCCAAGGA....................................................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................TACACAGTGAGCACGAGACGTCTTCCAAGAT.......................................................................................................................................... 31 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................TCCAAGATGAGAGCACTTACAAGGTCTGC..................................................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TAGGAAAAAAGGAAGACAAGGTAGGCAAAt.............................................................................................................................................................................................. 30 t 1.00 8.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................TGTTTTACACAGTGAGCACGAGACGTCT.................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TAGGAAAAAAGGAAGACAAGGagga................................................................................................................................................................................................... 25 agga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
......................................................................................................................................................................................ACCCAAGAGAGGGGTTTCAGTGGGGC.......................................... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............TCAAGTTGCATCCTCTCTAGGAAAAAAGG................................................................................................................................................................................................................ 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TACAAGGTCTGCAGGCATCACAAGG........................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................TCTCTAGGAAAAAAGGAAGACAAGGTA..................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
......................................................GCAAAGTCAGTAAAGAACACC............................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...........................................................................................................................CAAGGTCTGCAGGCATCACAAGGCTC..................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......TCTGCACTCAAGTTGCATCCT............................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................TGAGAGCACTTACAAGGTCTGC..................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.................................................................................................................................................GCTCCTCAGAGAGGACCAATCAAAGACCCAAGt........................................................................ 33 t 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................TTACAAGGTCTGCAGGCATCACAAGGCTC..................................................................................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGAGAGCACTTACAAGGTCTGCAGGCAT............................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................TCTCTAGGAAAAAAGGAAGACAAGGTAGtt.................................................................................................................................................................................................. 30 tt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TACAAGGTCTGCAGGCATCACAAGGCT...................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TACAAGGTCTGCAGGCATCACAAGGC....................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................AAAAAGGAAGACAAGGTAGGCAAAGT............................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................GGCAAAGTCAGTAAAGAACACCATGTTTTA....................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................................................CACCATGTTTTACACAGTGAGCACGAGAC...................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................AGGACCAATCAAAGACCCAAGGAAGTACCC................................................................ 30 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................CTCTAGGAAAAAAGGAAGACAAGGgagg................................................................................................................................................................................................... 28 gagg 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TAGGAAAAAAGGAAGACAAGGTAGGCAAAGTa............................................................................................................................................................................................ 32 a 1.00 4.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................TACACAGTGAGCACGAGACGTCTTCCA.............................................................................................................................................. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TACAAGGTCTGCAGGCATCACAAGGCTa..................................................................................................... 28 a 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
................................GGAAAAAAGGAAGACAAGGTAGGCAA................................................................................................................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CCCCAATCTGCACTCAAGTTGCATCCTCTCTAGGAAAAAAGGAAGACAAGGTAGGCAAAGTCAGTAAAGAACACCATGTTTTACACAGTGAGCACGAGACGTCTTCCAAGATGAGAGCACTTACAAGGTCTGCAGGCATCACAAGGCTCCTCAGAGAGGACCAATCAAAGACCCAAGGAAGTACCCAAGAGAGGGGTTTCAGTGGGGCTGGAGAGTGGGAGCTGGAAAGCTTGGCAGGGCTGGTGTGGGC
.................................................((.((((...(((.((..(((((.....)))))..)).((....))..))))))).))...............................................................................................................................................
..............................................47..........................................................107.............................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR037900(GSM510436)
testes_rep1. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
.................................................................................................................................................................ATCAAAGACCCAAGGAAGga..................................................................... 20 ga 3.00 0.00 - - - - - - - - - 2.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................................................................................................................................................TCAAAGACCCAAGGAAGggt..................................................................... 20 ggt 3.00 0.00 - - - - - - - - - 1.00 - - - - - 1.00 - - - - - - 1.00 - - - - - - - - -
..................................................................................................ACGTCTTCCAAGATGAGAGCACTTACA............................................................................................................................. 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TCAAAGACCCAAGGAAGTggct.................................................................... 22 ggct 2.00 0.00 - - - - - - - - - - - - - - - 1.00 1.00 - - - - - - - - - - - - - - -
.................................................................................................................................................................TCAAAGACCCAAGGAAGgtt..................................................................... 20 gtt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................................................................................................................................................AAAGACCCAAGGAAGTAtagg................................................................... 21 tagg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.................................................................................................................................................................TCAAAGACCCAAGGAAGTAggt................................................................... 22 ggt 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -