| Gene: Hook1 | ID: uc008ttb.1_intron_14_0_chr4_95680030_f.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(3) PIWI.ip |
(2) PIWI.mut |
(16) TESTES |
| CAACTGGAGCAGAAGCACCGCAAGATGAATGAGCTGGAAACCGAGCAAAGGTGACTGTTGCCTTTAGATGTCATGGGACTCCTCCATTACATAGAAGTGGGATACAGTGCTGTGGTCTGAATAAATAGGCAAGCAGATGTTTCGCACCACTGTATTCAAGAAAGAAGGAATTTAGTTGAGTGATACTATCATAAAATATATGAGTGATATTTTCATGTAATAGTCTTGTTAGCTAAGCTACTTATTCCTG ....................................................................................................(((((((((.(((((((((..............)))))....)))).)))))))))..................(((..(((((...)))))..)))..................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTGACTGTTGCCTTTAGATGTCATGGGACTCCTCCATTACATAGAAGTGGGA.................................................................................................................................................... | 52 | 1 | 38.00 | 38.00 | 38.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................GATGAATGAGCTGGAAACCGAGCAAAG........................................................................................................................................................................................................ | 27 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................AATGAGCTGGAAACCGAGCAAAGGTt..................................................................................................................................................................................................... | 26 | t | 2.00 | 0.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...........................AATGAGCTGGAAACCGAGCAAAGGTtg.................................................................................................................................................................................................... | 27 | tg | 2.00 | 0.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................GATGAATGAGCTGGAAACCGAGCA........................................................................................................................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - |
| ....................CAAGATGAATGAGCTGGAAACCGAGCAAAG........................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................AATGAGCTGGAAACCGAGCAAAGGTttt................................................................................................................................................................................................... | 28 | ttt | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................GATGAATGAGCTGGAAACCGAG............................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................AATGAGCTGGAAACCGAGCAAAGGTtga................................................................................................................................................................................................... | 28 | tga | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................AATGAGCTGGAAACCGAGCAAAG........................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ......................AGATGAATGAGCTGGAAACC................................................................................................................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................AAGATGAATGAGCTGGAAACCGAGCA........................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................TTAGATGTCATGGGcggc......................................................................................................................................................................... | 18 | cggc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................GAGCTGGAAACCGAGCAAAGGT...................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .........................TGAATGAGCTGGAAACCGAGCAAAGGTt..................................................................................................................................................................................................... | 28 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................GATGAATGAGCTGGAAACCGAGCAAA......................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................GATGAATGAGCTGGAAACCGAGCAAAGGT...................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................TGAATGAGCTGGAAAC................................................................................................................................................................................................................. | 16 | 3 | 0.33 | 0.33 | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - |
| CAACTGGAGCAGAAGCACCGCAAGATGAATGAGCTGGAAACCGAGCAAAGGTGACTGTTGCCTTTAGATGTCATGGGACTCCTCCATTACATAGAAGTGGGATACAGTGCTGTGGTCTGAATAAATAGGCAAGCAGATGTTTCGCACCACTGTATTCAAGAAAGAAGGAATTTAGTTGAGTGATACTATCATAAAATATATGAGTGATATTTTCATGTAATAGTCTTGTTAGCTAAGCTACTTATTCCTG ....................................................................................................(((((((((.(((((((((..............)))))....)))).)))))))))..................(((..(((((...)))))..)))..................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
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| ........................................................................................................................................................................................................................................GCTACTTATTCCTgaga. | 17 | gaga | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................TGGTCTGAATAAATtatc............................................................................................................................ | 18 | tatc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |