| Gene: Cdc26 | ID: uc008teh.1_intron_24_0_chr4_62006612_r | SPECIES: mm9 |
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(4) OTHER.mut |
(2) OVARY |
(4) PIWI.ip |
(1) PIWI.mut |
(21) TESTES |
| ACAGGCACGTCCTCAGTGCTGTTTGCCACTGCAGTGCATGCATACCGCTAGTAAGTAGTTGGAAGAGAAAGCCCTCAGAGCTGGGGAGGCTGTGGACCAGCCGGCTGCAGTTCCTGTCCTTCCTCAGAAGCCTGTGCTCATCGTAGCCTAGTTCCTCAGAGAAACTCAGCATTATTTTGTCTATGTTGTTAATGTTTGGGCCCTCCACAGCAACTTTCTGAGATTTTAGGGATACTATGGATAATAGATGACTGAAGAATAAAAAGTTGGGGCTGGGTGTGATGGCTCTCACCTTTAATCCCAGCACTTGAGAGGCAGAGTCTGTAGGTTTTCTGTGATTCCTAGATCTGCCAGAGTTGTACCAATGAGACCCTGTCTCAAAGAAATAGAAGTTGCAGAAGAACTTTAGATTAAAAGTTGCCCACCTCTCACCTTTCCTAAAGACCAAATACTAGCTGTTTCAGATCAGAGAACTGGCTCTTCATGGTTGAAAGGGATTCTGATATTTGTTGTATTCTTGTTTCAATAGCATAAATGGTCAATATGCAAAGCAGGGCAAATTTGGAGCGGCTGTCCTGG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................ACCAGCCGGCTGCAGTTCCTGTCCTTCCTCAGAAGCCTGTGCTCATCGTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 52 | 1 | 21.00 | 21.00 | 21.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGATTCTGATATTggt..................................................................... | 19 | ggt | 4.00 | 0.00 | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGATTCTGATATTggtc.................................................................... | 20 | ggtc | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - |
| .....................................................................................................................................................................................................................................................................................................TTTAATCCCAGCACTTGAGAGGCAtttt.................................................................................................................................................................................................................................................................. | 28 | tttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................AAAGAAATAGAAGTgtct...................................................................................................................................................................................... | 18 | gtct | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................TTTAATCCCAGCACTTGAGAGGCtgtg................................................................................................................................................................................................................................................................... | 27 | tgtg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATCAGAGAACTGGCTCTTCATGGTTGAAA...................................................................................... | 33 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................................................................................................................................................................AGCATTATTTTGTCTAgtgc........................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | gtgc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................TAATCCCAGCACTTGAGAGGCAGAct.................................................................................................................................................................................................................................................................. | 26 | ct | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................TTTAATCCCAGCACTTGAGAGGCAtt.................................................................................................................................................................................................................................................................... | 26 | tt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGATTCTGATtggt....................................................................... | 17 | tggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................TAATCCCAGCACTTGAGAGGCAtt.................................................................................................................................................................................................................................................................... | 24 | tt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATTTGTTGTgctt.............................................................. | 18 | gctt | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................TTTAATCCCAGCACTTGAGAGGCtt..................................................................................................................................................................................................................................................................... | 25 | tt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGTAGTTGGAAGAGAAAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGATTCTGATATTgtt..................................................................... | 19 | gtt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TGTTGTTAATGTTTGGct.......................................................................................................................................................................................................................................................................................................................................................................................... | 18 | ct | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................TTTAATCCCAGCACTTGAGAGGCAGAGT.................................................................................................................................................................................................................................................................. | 28 | 12 | 0.42 | 0.42 | - | - | 0.08 | - | - | - | - | - | - | - | 0.17 | 0.08 | - | - | - | - | - | - | - | - | - | 0.08 | - |
| .......................................................................................................................................................................................................................................................................................................TAATCCCAGCACTTGAGAGGCAGAGT.................................................................................................................................................................................................................................................................. | 26 | 15 | 0.20 | 0.20 | - | 0.07 | - | 0.07 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.07 |
| .......................................................................................................................................................................................................................................................................................................TAATCCCAGCACTTGAGAGGCAGAGTga................................................................................................................................................................................................................................................................ | 28 | ga | 0.07 | 0.20 | - | - | - | - | - | - | - | - | - | - | 0.07 | - | - | - | - | - | - | - | - | - | - | - | - |
| ACAGGCACGTCCTCAGTGCTGTTTGCCACTGCAGTGCATGCATACCGCTAGTAAGTAGTTGGAAGAGAAAGCCCTCAGAGCTGGGGAGGCTGTGGACCAGCCGGCTGCAGTTCCTGTCCTTCCTCAGAAGCCTGTGCTCATCGTAGCCTAGTTCCTCAGAGAAACTCAGCATTATTTTGTCTATGTTGTTAATGTTTGGGCCCTCCACAGCAACTTTCTGAGATTTTAGGGATACTATGGATAATAGATGACTGAAGAATAAAAAGTTGGGGCTGGGTGTGATGGCTCTCACCTTTAATCCCAGCACTTGAGAGGCAGAGTCTGTAGGTTTTCTGTGATTCCTAGATCTGCCAGAGTTGTACCAATGAGACCCTGTCTCAAAGAAATAGAAGTTGCAGAAGAACTTTAGATTAAAAGTTGCCCACCTCTCACCTTTCCTAAAGACCAAATACTAGCTGTTTCAGATCAGAGAACTGGCTCTTCATGGTTGAAAGGGATTCTGATATTTGTTGTATTCTTGTTTCAATAGCATAAATGGTCAATATGCAAAGCAGGGCAAATTTGGAGCGGCTGTCCTGG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................AGCCTAGTTCCTCAcagt..................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | cagt | 12.00 | 0.00 | - | 4.00 | 1.00 | - | 3.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................TTAATCCCAGCACTTGAGAGGCAcgga...................................................................................................................................................................................................................................................................... | 27 | cgga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................TCTCACCTTTAATCCCAGCACTTGAa............................................................................................................................................................................................................................................................................ | 26 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................TCTCACCTTTAATCCCAGCACTTGAaa............................................................................................................................................................................................................................................................................ | 27 | aa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................TCACCTTTAATCCCAGCACTTGA............................................................................................................................................................................................................................................................................ | 23 | 12 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................CTCACCTTTAATCCCAGCACTTGAGAG......................................................................................................................................................................................................................................................................... | 27 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - |