(7)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(3)
PIWI.mut
(32)
TESTES

Sense strand
CTTCGGTCCTCCCTGAAAACTGACTGAGGAGGAGCCGGGATTGCCCTGAGGTGAGAAACGGTGGCTTTAGCTTGAGCCCAGGCTCTGCGCCTGCGCGGGAGCGGGTGCTCCTGTCTGCGAGCGGCGCGAGCCGAGACCGGTATTTGCGGGGTAACTAGAACTTGGCTTCTCGGGTTCTTCGAGGGTTCTCGCGCTCTCTCACGTTTCATCTCCCTGTCTACCGCCTCTTCAGCAATTACCTCGACCACCA
..........................................................(((((((((......)))))..(((((.((((((((((((((((....))))))))..)))...))))))))))...))))...............................................................................................................
..................................................51........................................................................................141...........................................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
.............TGAAAACTGACTGAGGAGGAGCCGG.................................................................................................................................................................................................................... 25 1 108.00 108.00 35.00 15.00 12.00 7.00 - 10.00 4.00 8.00 2.00 6.00 3.00 2.00 2.00 - - - - - - - - - - 1.00 - - 1.00 - - - - - -
.............TGAAAACTGACTGAGGAGGAGCCGGG................................................................................................................................................................................................................... 26 1 41.00 41.00 - 9.00 - 12.00 - 4.00 4.00 - 1.00 1.00 1.00 - 1.00 1.00 - 2.00 - - 1.00 - 2.00 - - 1.00 - - - 1.00 - - - - -
...............................................................................................................TGTCTGCGAGCGGCGCGAGCCGAGAC................................................................................................................. 26 1 12.00 12.00 - - - - 8.00 - - - - - - - - - 1.00 - - 1.00 - - - - - - - 1.00 - - - - - - 1.00
.............TGAAAACTGACTGAGGAGGAGCCGGGA.................................................................................................................................................................................................................. 27 1 8.00 8.00 - 2.00 - - 2.00 - 1.00 - - - 1.00 - - 1.00 - - - - - - - - 1.00 - - - - - - - - - -
.............................................................................................................................................ATTTGCGGGGTAACTAGAACTTGGC.................................................................................... 25 1 5.00 5.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGTCTGCGAGCGGCGCGAGCCGAGACCGGTA............................................................................................................ 31 1 5.00 5.00 - - 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................AACTGACTGAGGAGGAGCCGGGATTGC.............................................................................................................................................................................................................. 27 1 5.00 5.00 - - 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............TGAAAACTGACTGAGGAGGAGCCGGGAT................................................................................................................................................................................................................. 28 1 5.00 5.00 - 1.00 - 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TATTTGCGGGGTAACTAGAACTTGGC.................................................................................... 26 1 5.00 5.00 - - - - - - 1.00 1.00 - - - - - - - 1.00 - - 1.00 1.00 - - - - - - - - - - - - -
...................................................................................................................................................GGGGTAACTAGAACTTGGCTTCTCGGG............................................................................ 27 1 4.00 4.00 - - 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................TGAGGTGAGAAACGGTGGCTTTAGCTTG................................................................................................................................................................................ 28 1 3.00 3.00 - 1.00 - - - - 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...............................................................................................................TGTCTGCGAGCGGCGCGAGCCGAGA.................................................................................................................. 25 1 3.00 3.00 - - - - 2.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.............TGAAAACTGACTGAGGAGGAGC....................................................................................................................................................................................................................... 22 1 3.00 3.00 - - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................TGAGGTGAGAAACGGTGG.......................................................................................................................................................................................... 18 1 2.00 2.00 - - - - - - - - - - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - -
..........................................................................................................GCTCCTGTCTGCGAGCGGCGCGAGC....................................................................................................................... 25 1 2.00 2.00 - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................GGGGTAACTAGAACTTGGCTTCTCGG............................................................................. 26 1 2.00 2.00 - - - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................CGGGGTAACTAGAACTTGGCTTCTCGG............................................................................. 27 1 2.00 2.00 - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
.................AACTGACTGAGGAGGAGCCGGGATTGCCCTGAa........................................................................................................................................................................................................ 33 a 2.00 0.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGCGAGCGGCGCGAGCCGAGACC................................................................................................................ 23 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................TGAGAAACGGTGGCTTTAGCTTGAGCC............................................................................................................................................................................ 27 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
............CTGAAAACTGACTGAGGAGGAGCCGG.................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGTCTGCGAGCGGCGCGAGCCGAGACC................................................................................................................ 27 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............TGAAAACTGACTGAGGAGGAGCCGGGt.................................................................................................................................................................................................................. 27 t 2.00 41.00 - 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................TGACTGAGGAGGAGCCGGGATTGCCCTGA......................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................GCGGGGTAACTAGAACTT....................................................................................... 18 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................GGGGTAACTAGAACTTGGCTT.................................................................................. 21 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................AACTGACTGAGGAGGAGCCGGGATT................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................TGAGAAACGGTGGCTTTAGCTTGAG.............................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...................................................................TAGCTTGAGCCCAGGCTCTGCGCCTGCGCGG........................................................................................................................................................ 31 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............TGAAAACTGACTGAGGAGGAGCagg.................................................................................................................................................................................................................... 25 agg 1.00 3.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................TGCGCGGGAGCGGGTGCTCCTGT........................................................................................................................................ 23 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............TGAAAACTGACTGAGGAGGAGCCG..................................................................................................................................................................................................................... 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............TGAAAACTGACTGAGGAGGAGCC...................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
......................................................................................GCGCCTGCGCGGGAGCGGG................................................................................................................................................. 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.............................................................................................................................................ATTTGCGGGGTAACTAGAACT........................................................................................ 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..............................................................................................................................................TTTGCGGGGTAACTAGAACTTGG..................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.................AACTGACTGAGGAGGAGCCGGGAT................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................TGCGCCTGCGCGGGAGCGGGTGCTt............................................................................................................................................ 25 t 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................ATTTGCGGGGTAACTAG............................................................................................ 17 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGTCTGCGAGCGGCGCGAGCCGAGACCG............................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............AAAACTGACTGAGGAGGAGCCGGGAT................................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGTCTGCGAGCGGCGCGAGCCGAGAa................................................................................................................. 26 a 1.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..................ACTGACTGAGGAGGAGCC...................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................CTACCGCCTCTTCAGCAATTACCTCG....... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.........TCCCTGAAAACTGACTGAGGA............................................................................................................................................................................................................................ 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................TGAGGTGAGAAACGGTGGCTTTAGCTT................................................................................................................................................................................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................GGTGAGAAACGGTGGCTTTAGCT.................................................................................................................................................................................. 23 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................AGGAGGAGCCGGGATTGCCCTGAGa....................................................................................................................................................................................................... 25 a 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............TGAAAACTGACTGAGGAGGAGCtggg................................................................................................................................................................................................................... 26 tggg 1.00 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................CCGAGACCGGTATTTGCG...................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CTTCGGTCCTCCCTGAAAACTGACTGAGGAGGAGCCGGGATTGCCCTGAGGTGAGAAACGGTGGCTTTAGCTTGAGCCCAGGCTCTGCGCCTGCGCGGGAGCGGGTGCTCCTGTCTGCGAGCGGCGCGAGCCGAGACCGGTATTTGCGGGGTAACTAGAACTTGGCTTCTCGGGTTCTTCGAGGGTTCTCGCGCTCTCTCACGTTTCATCTCCCTGTCTACCGCCTCTTCAGCAATTACCTCGACCACCA
..........................................................(((((((((......)))))..(((((.((((((((((((((((....))))))))..)))...))))))))))...))))...............................................................................................................
..................................................51........................................................................................141...........................................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
............................................................................................................................................................................................................................CCGCCTCTTCAGCAATTACCTCGACCA... 27 1 2.00 2.00 - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
...........................................CCCTGAGGTGAGAAACGGTGGCTTTA..................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TCGAGGGTTCTCGCGCTCTCTCACGTT............................................. 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGCGAGCGGCGCGAGCCGAGACCGGTA............................................................................................................ 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................GAGGGTTCTCGCGCTCTCTCACGTTTCA.......................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................GAGACCGGTATTTGCGGGGTAACTA............................................................................................. 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -