(2)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(24)
TESTES

Sense strand
GGTGAAAGATGCTGATAAACTAACTATGGGCCAGAATGTGACTATGGTGGCCCCGCACTCCCTTGAGAGCATCATTCAGCAGCCACCAGACCGCTGGATGACTAATGCTGAGATGACCCACTACCAGAGCTTGTTATTGACTGATCAAGTGACTTTCGCTCCACTTGCCACTCTTAATCCTGCCACCCTACTGCCTGAAGCTGACGAGACCCCCGTACATCAGTGTGAGGAGATACTGGCGGAGGAAACT
............................................................................................(((((....)))..))..................((((..((((((((....)))).))))....)))).........................................................................................
.........................................................................................90.........................................................................165...................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
..............................................................................................TGGATGACTAATGCTGAGATGACCCACT................................................................................................................................ 28 1 13.00 13.00 4.00 - - 4.00 1.00 - 3.00 - - - - - - - - - - - - - - - 1.00 - -
..............................................................................................TGGATGACTAATGCTGAGATGACCCAC................................................................................................................................. 27 1 13.00 13.00 4.00 - - 1.00 5.00 - 1.00 2.00 - - - - - - - - - - - - - - - - -
..................................................................................................TGACTAATGCTGAGATGACCCACTACC............................................................................................................................. 27 1 8.00 8.00 2.00 - - 3.00 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - -
...............TAAACTAACTATGGGCCAGAATGTGAC................................................................................................................................................................................................................ 27 1 5.00 5.00 - 1.00 - - - - 1.00 - - - - 1.00 - - - - - 1.00 - 1.00 - - - - -
............................................................................................................................................................................................TACTGCCTGAAGCTGACGAGACCCCC.................................... 26 1 4.00 4.00 - 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................ATTGACTGATCAAGTGACTTTCGCTCCACT..................................................................................... 30 1 4.00 4.00 - - - - - - - - 4.00 - - - - - - - - - - - - - - - -
.........................................................................................................................TACCAGAGCTTGTTATTGACTGATCAAG..................................................................................................... 28 1 3.00 3.00 - - - - - - - - - 1.00 - 1.00 - 1.00 - - - - - - - - - - -
......................................................................................................................................TATTGACTGATCAAGTGACTTTCGCTC......................................................................................... 27 1 3.00 3.00 - - 1.00 - - - - - - - - - 2.00 - - - - - - - - - - - -
..................................................................................................TGACTAATGCTGAGATGACCCACTACCA............................................................................................................................ 28 1 3.00 3.00 1.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
...............TAAACTAACTATGGGCCAGAATGTGACT............................................................................................................................................................................................................... 28 1 3.00 3.00 - - - - 1.00 2.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................TAATGCTGAGATGACCCACTACCAGAGC........................................................................................................................ 28 1 3.00 3.00 - 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
....................................................................................................................CCCACTACCAGAGCTTGTTATTGACTGATC........................................................................................................ 30 1 3.00 3.00 - - - - - - - - - 1.00 1.00 - - - - 1.00 - - - - - - - - -
....................................................................................................................CCCACTACCAGAGCTTGTTATTGACTG........................................................................................................... 27 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - -
............TGATAAACTAACTATGGGCCAGAATG.................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGAAGCTGACGAGACCCCCGTACATC............................. 26 1 2.00 2.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................TGGATGACTAATGCTGAGATGACCCACTA............................................................................................................................... 29 1 2.00 2.00 - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................................................TGACTAATGCTGAGATGACCCACTAC.............................................................................................................................. 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TACATCAGTGTGAGGAGATACTGGCG......... 26 1 2.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - 1.00 - - -
...............................................................TGAGAGCATCATTCAGCAGCCACCAG................................................................................................................................................................. 26 1 2.00 2.00 - 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
........................................................................................GACCGCTGGATGACTAATGCTGAGATGACCCAC................................................................................................................................. 33 1 2.00 2.00 - - - - - - - - - - - - - - - - 2.00 - - - - - - - -
.....................................................................................................................................TTATTGACTGATCAAGTGACTTTCGCTCC........................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.....................................................................................................................CCACTACCAGAGCTTGTTATTGACTGAT......................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TGAGGAGATACTGGCGGAGGAAAa. 24 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................TGACCCACTACCAGAGCTTGTTATTGACTG........................................................................................................... 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................ATTGACTGATCAAGTGACTTTCGCTCaact..................................................................................... 30 aact 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................CCACTCTTAATCCTGCCACCCTACTGCCT...................................................... 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................AACTAACTATGGGCCAGAATGTGACT............................................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TGAGGAGATACTGGCGGAGGAAAacgg 27 acgg 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..............................................................................................................................................................................TAATCCTGCCACCCTACTGCCTGAAGC................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.............................................................................................CTGGATGACTAATGCTGAGATGACCCA.................................................................................................................................. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................................TGCTGAGATGACCCACTACCAGAGCTT...................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................................TTGACTGATCAAGTGACTTTCGCTCCA....................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
......................................................................................................TAATGCTGAGATGACCCACTACCAGA.......................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................TTGTTATTGACTGATCAAGTGcctt............................................................................................... 25 cctt 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...............TAAACTAACTATGGGCCAGAATGTGACTA.............................................................................................................................................................................................................. 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................TACTGCCTGAAGCTGACGAGACCCCCGT.................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
....................................TGTGACTATGGTGGCCCCGCACTCCCT........................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGGATGACTAATGCTGAGATGACCCAa................................................................................................................................. 27 a 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................CTGGATGACTAATGCTGAGATGACCCACT................................................................................................................................ 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................TGAGATGACCCACTACCAGAGCTTGT.................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
............................................................................................................................................................................................TACTGCCTGAAGCTGACGAGACC....................................... 23 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................TTGCCACTCTTAATCCTGCCACCCTACTGC........................................................ 30 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TGCCACCCTACTGCCTGAAGCTGACGAG.......................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................................................TAATGCTGAGATGACCCACTACCA............................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
....................................TGTGACTATGGTGGCCCCGCACTCCC............................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................TAACTATGGGCCAGAATGTGACTATGGTG......................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
....................................TGTGACTATGGTGGCCCCGCACTCC............................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..TGAAAGATGCTGATAAACTAA................................................................................................................................................................................................................................... 21 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TCGCTCCACTTGCCACTCTTAATCCTGC................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................CCTGAAGCTGACGAGACCCCCGTAC................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.................................................................................................................................................................................TCCTGCCACCCTACTGCCTGAAGCTGAC............................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................TATGGTGGCCCCGCACTCCCTTGAGAG..................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGGATGACTAATGCTGAGATGACCCA.................................................................................................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................ACCCTACTGCCTGAAGCTGACGAGACCC...................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................TGGATGACTAATGCTGAGATGACCCACTt............................................................................................................................... 29 t 1.00 13.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................ACTGCCTGAAGCTGACGAGACCCCCGTAC................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00
...GAAAGATGCTGATAAACTAACTATGGGC........................................................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..TGAAAGATGCTGATAAACTAACTATGGGC........................................................................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TCTTAATCCTGCCACCCTACTGC........................................................ 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................TATGGGCCAGAATGTGACTATGGTGGC....................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...................................................................................................................................TGTTATTGACTGATCAAGTGACTTTCGC........................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..................ACTAACTATGGGCCAGAATGTGACTATG............................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
....................................................................................................................CCCACTACCAGAGCTTGTTATTGAC............................................................................................................. 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................GCCACCCTACTGCCTGAAGCTGACGAGAC........................................ 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TCCACTTGCCACTCTTAATCCTGCCACC............................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................CTACTGCCTGAAGCTGACGAGACCCC..................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................................TGTGACTATGGTGGCCCCGCACTt.............................................................................................................................................................................................. 24 t 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................AAGTGACTTTCGCTCC........................................................................................ 16 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
...................................ATGTGACTATGGTGG........................................................................................................................................................................................................ 15 6 0.17 0.17 - - - - - - - - - - - - - - - - - - - - 0.17 - - - -
....................................................................................................................CCCACTACCAGAGCTTGT.................................................................................................................... 18 8 0.12 0.12 - - - - - - - - - 0.12 - - - - - - - - - - - - - - -

Antisense strand
GGTGAAAGATGCTGATAAACTAACTATGGGCCAGAATGTGACTATGGTGGCCCCGCACTCCCTTGAGAGCATCATTCAGCAGCCACCAGACCGCTGGATGACTAATGCTGAGATGACCCACTACCAGAGCTTGTTATTGACTGATCAAGTGACTTTCGCTCCACTTGCCACTCTTAATCCTGCCACCCTACTGCCTGAAGCTGACGAGACCCCCGTACATCAGTGTGAGGAGATACTGGCGGAGGAAACT
............................................................................................(((((....)))..))..................((((..((((((((....)))).))))....)))).........................................................................................
.........................................................................................90.........................................................................165...................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
.........................................................................CAGCAGCCACCAGACgag............................................................................................................................................................... 18 gag 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
........ATGCTGATAAACTAACTATGGGCCAGA....................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................................................................GACCCACTACCAGAGCTT...................................................................................................................... 18 8 0.12 0.12 - - - - - - - - - 0.12 - - - - - - - - - - - - - - -