| Gene: Nfkb1 | ID: uc008rlw.1_intron_5_0_chr3_135256898_r | SPECIES: mm9 |
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(6) OTHER.mut |
(21) TESTES |
| TGGCCGTGGAGTACGACAACATCTCCTTGGCTGGCTGCCTGCTTCTGGAGGTAAAGGCGTACTTGTGATCTTGACCTAAATCCCCCTGGAAGTTTTAGGGAAGTCTTTTCAAAGAATGACTCTAGGGCCAGCTCGCTGTCAGTATTCCACTGTCTGCTTTCTGCATCCCCAGCTCCAGCCCAGCTCTCAACCTGGGGATGCCAGTGACAGAGCCAGCCCAGTATAGCAGTTGGGTGAATGATGTAACCTGAGGTGCAACGGAGATGTGGAGGTAGACAGTGGAGGAGAGAGCCCCTGCTAACTCTTTCTTTGTGGGCGGATTTAGGGTGATGCCCACGTGGACAGTACCACCTATGATGGGACTACACCTCTGCA .................................................................................................................................................................................................................................(((.((((((..........)))).)).))).(((((((...((((.(((.(((.((..........)))))))).)))).))))))).............................................................. .................................................................................................................................................................................................................................226................................................................................................325................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGG.......................................................................................................................... | 20 | 1 | 905.00 | 905.00 | 194.00 | 160.00 | 137.00 | 111.00 | 76.00 | 48.00 | 41.00 | 27.00 | 30.00 | 32.00 | 25.00 | 13.00 | 2.00 | 3.00 | 3.00 | - | 1.00 | - | 1.00 | 1.00 | - |
| ........................................................................................................................................................................................................................................GGTGAATGATGTAACCTGAGG.......................................................................................................................... | 21 | 1 | 32.00 | 32.00 | 5.00 | 12.00 | 3.00 | 1.00 | 2.00 | 4.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAG........................................................................................................................... | 19 | 1 | 10.00 | 10.00 | 4.00 | 1.00 | 1.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGT......................................................................................................................... | 21 | 1 | 6.00 | 6.00 | 1.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGA............................................................................................................................ | 18 | 1 | 5.00 | 5.00 | 1.00 | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGCAACGGAa................................................................................................................ | 30 | a | 3.00 | 1.00 | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGCA...................................................................................................................... | 24 | 1 | 3.00 | 3.00 | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTG............................................................................................................................. | 17 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGaa...................................................................................................................... | 24 | aa | 3.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGa....................................................................................................................... | 23 | a | 3.00 | 2.00 | - | - | - | - | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................GGTGAATGATGTAACCTGAGGTGC....................................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTG........................................................................................................................ | 22 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGcgg.......................................................................................................................... | 20 | cgg | 2.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGCAA..................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................TGTGGAGGTAGACAGTGG............................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................GGTGAATGATGTAACCTGAGGTGCAACGGA................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGc......................................................................................................................... | 21 | c | 1.00 | 905.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGt.......................................................................................................................... | 20 | t | 1.00 | 10.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TGCCTGCTTCTGGAGtgc.................................................................................................................................................................................................................................................................................................................................. | 18 | tgc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGCAACGGAGAT.............................................................................................................. | 32 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGCAACGGA................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................ATGATGGGACTACACCTCT... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................TGATGTAACCTGAGGTGCAACGGAGATGTGG.......................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................ATGATGTAACCTGAGGTa........................................................................................................................ | 18 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................ACAGTACCACCTATGATGGGACT........... | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................GGTGAATGATGTAACCTGAGGTGCAACGG.................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGCAACGGAaaa.............................................................................................................. | 32 | aaa | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................GGTGAATGATGTAACCTGAGGTG........................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................CTGGCTGCCTGCTTCTGGAG..................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGCAACG................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................GATGTGGAGGTAGACAGTGGAGG.......................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAtg.......................................................................................................................... | 20 | tg | 1.00 | 5.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACCTGAGGTGg....................................................................................................................... | 23 | g | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................CTGCCTGCTTCTGGAG..................................................................................................................................................................................................................................................................................................................................... | 16 | 9 | 0.11 | 0.11 | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................GTGAATGATGTAACC............................................................................................................................... | 15 | 12 | 0.08 | 0.08 | - | - | - | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGGCCGTGGAGTACGACAACATCTCCTTGGCTGGCTGCCTGCTTCTGGAGGTAAAGGCGTACTTGTGATCTTGACCTAAATCCCCCTGGAAGTTTTAGGGAAGTCTTTTCAAAGAATGACTCTAGGGCCAGCTCGCTGTCAGTATTCCACTGTCTGCTTTCTGCATCCCCAGCTCCAGCCCAGCTCTCAACCTGGGGATGCCAGTGACAGAGCCAGCCCAGTATAGCAGTTGGGTGAATGATGTAACCTGAGGTGCAACGGAGATGTGGAGGTAGACAGTGGAGGAGAGAGCCCCTGCTAACTCTTTCTTTGTGGGCGGATTTAGGGTGATGCCCACGTGGACAGTACCACCTATGATGGGACTACACCTCTGCA .................................................................................................................................................................................................................................(((.((((((..........)))).)).))).(((((((...((((.(((.(((.((..........)))))))).)))).))))))).............................................................. .................................................................................................................................................................................................................................226................................................................................................325................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
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| ......................................................................CCTAAATCCCCCTGcttt............................................................................................................................................................................................................................................................................................... | 18 | cttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |