| Gene: Rap1a | ID: uc008qve.1_intron_0_0_chr3_105531883_r.5p | SPECIES: mm9 |
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(3) OTHER.mut |
(2) PIWI.ip |
(1) PIWI.mut |
(15) TESTES |
| AAATCATGTTTGCTGCTCTAGACCTGAAGTCAGCAGCAGCTCTGAGCCAGGTAAGACACTTAAGCAGAACGGAGGACTCTGCATCTCCCTGTCTCTTATTCTCTGTGTGTCTGAGCATCTATAGCTTGTACTTGTGTGCTTGTAGAGATACCTGTGTCTGTTGAGTGATTTGTTTACTCCCCAGGAGGGTCTAAGCTCAGAGTGAGGACCATGTGTGATTTGCTTGCCACCAGGTTGACCACACCTGCCA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................CTGTGTCTGTTGAGTGATT................................................................................ | 19 | 1 | 12.00 | 12.00 | 12.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGACACTTAAGCAGAACGGAGGACT............................................................................................................................................................................ | 28 | 1 | 3.00 | 3.00 | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGACACTTAAGCAGAACGGAGGAC............................................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGACACTTAAGCAGAACGGAGGACTC........................................................................................................................................................................... | 29 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............CTCTAGACCTGAAGTCAGC........................................................................................................................................................................................................................ | 19 | 2 | 1.50 | 1.50 | - | - | - | 1.50 | - | - | - | - | - | - | - | - | - | - | - |
| .........................GAAGTCAGCAGCAGCTCTGAGC........................................................................................................................................................................................................... | 22 | 3 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......................CCTGAAGTCAGCAGCAGCTCTGAGCCAG........................................................................................................................................................................................................ | 28 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 0.50 | 0.50 | - | - |
| ..........................................................CTTAAGCAGAACGGAGGACTCTGCA....................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................ACCTGAAGTCAGCAGtt.................................................................................................................................................................................................................... | 17 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................................................GTAAGACACTTAAGCAGAACGG.................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ........................TGAAGTCAGCAGCAGCTCTGAGC........................................................................................................................................................................................................... | 23 | 3 | 0.67 | 0.67 | - | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - | - |
| ...................AGACCTGAAGTCAGCAG...................................................................................................................................................................................................................... | 17 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TGCTCTAGACCTGAAGTCAGCAGCAGCTCT............................................................................................................................................................................................................... | 30 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |
| .................CTAGACCTGAAGTCAGCAGCAGCTCT............................................................................................................................................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |
| ...........GCTGCTCTAGACCTGAAGTCAGCA....................................................................................................................................................................................................................... | 24 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - |
| ................................GCAGCAGCTCTGAGCCAG........................................................................................................................................................................................................ | 18 | 4 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | 0.25 |
| ....................GACCTGAAGTCAGCAGCAGCTCTGAGCC.......................................................................................................................................................................................................... | 28 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - |
| .......................CTGAAGTCAGCAGCAGCTCTG.............................................................................................................................................................................................................. | 21 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - |
| .......................CTGAAGTCAGCAGCAGCTC................................................................................................................................................................................................................ | 19 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - |
| .................................CAGCAGCTCTGAGCCAG........................................................................................................................................................................................................ | 17 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - |
| AAATCATGTTTGCTGCTCTAGACCTGAAGTCAGCAGCAGCTCTGAGCCAGGTAAGACACTTAAGCAGAACGGAGGACTCTGCATCTCCCTGTCTCTTATTCTCTGTGTGTCTGAGCATCTATAGCTTGTACTTGTGTGCTTGTAGAGATACCTGTGTCTGTTGAGTGATTTGTTTACTCCCCAGGAGGGTCTAAGCTCAGAGTGAGGACCATGTGTGATTTGCTTGCCACCAGGTTGACCACACCTGCCA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................CCACCAGGTTGACCACA....... | 17 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - |