(6)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(3)
PIWI.mut
(22)
TESTES

Sense strand
TGTGTGAGGTGGCAAGGAACAGTGTCCTGCAGTGTGGGATTTCTCATGAGGTAGACTTGACCGTGGCTCCCTACCCTTCTGAGAGTTGGGTCTAACAATCTAACCACTGAATCATTAATGAGGAAAACAGGCAGGAAAGCTTTTGCACAGACCACATACAGCTGCTATGGCTAGGGACTAGAAGACTGTCCTGGGCTGGGAATACAGCTTAGTGGTAGCGCAAGCCTTCGAGGAACTAATTTGAGTCCCTACAGCTCCTCCGTCAAGCCCTATTCTCTGCCATGGCTCCACCTTTGATTTCTCAGGAAATGTGCCCATGGAGGGAGGCACTACAGAAATGACCCCTGGTCTCCTCTTGTTTATGAGTAACATGAAGATTACGGTGGAGGAGCAATCGCTGCCTATCCCGGTATAAAAAGAGACTCAGAGACCTCTTTTCCCATTGTCTTACAGGAAAAAGCAAAGTTTCTGGGCAACAATTACCTTGAGGAAGGCCCTGTTGG
.....................................................................................................................................................................................................................................................................................................................................................................((((.(((((.............(((.((((((((....))).))).)))))............))))).))))........................................................................
.................................................................................................................................................................................................................................................................................................................................................................354................................................................................................453................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesWT1()
Testes Data. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT4()
Testes Data. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR037902(GSM510438)
testes_rep3. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
.........................................TCTCATGAGGTAGACTTGACCGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 12.00 12.00 1.00 8.00 - - 1.00 - - - - - 2.00 - - - - - - - - - - - -
..................................................................................................................................................................TGCTATGGCTAGGGACTAGAAGACTGTC......................................................................................................................................................................................................................................................................................................................... 28 1 6.00 6.00 - 1.00 2.00 - - - 1.00 - - 2.00 - - - - - - - - - - - - -
..................................................................................................................................................................TGCTATGGCTAGGGACTAGAAGACTG........................................................................................................................................................................................................................................................................................................................... 26 1 5.00 5.00 2.00 - - - - - 1.00 - - - - - - 1.00 - - - - - 1.00 - - -
.........................................TCTCATGAGGTAGACTTGACCGTGGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 5.00 5.00 - - - - - 5.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TAGAAGACTGTCCTGGGCTGGGAAT............................................................................................................................................................................................................................................................................................................ 25 1 4.00 4.00 3.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGCTATGGCTAGGGACTAGAAGAC............................................................................................................................................................................................................................................................................................................................. 24 1 4.00 4.00 3.00 - - - - - - - - - - 1.00 - - - - - - - - - - -
..TGTGAGGTGGCAAGGAACAGTGTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 25 1 3.00 3.00 - - 1.00 2.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGCTATGGCTAGGGACTAGAAGACT............................................................................................................................................................................................................................................................................................................................ 25 1 3.00 3.00 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TAGAAGACTGTCCTGGGCTGGGAATAC.......................................................................................................................................................................................................................................................................................................... 27 1 3.00 3.00 - - - - - - - 1.00 - - - 2.00 - - - - - - - - - - -
..TGTGAGGTGGCAAGGAACAGTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 24 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................TAACATGAAGATTACGGTGGAGGAGCA.............................................................................................................. 27 1 2.00 2.00 - - - - - - 1.00 - - - - - - - - - - - 1.00 - - - -
............................................................................................................................................................TACAGCTGCTATGGCTAGGGACTAGA................................................................................................................................................................................................................................................................................................................................. 26 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - 1.00 - - - - - - -
...............................................................................TGAGAGTTGGGTCTAACAATCTAACC.............................................................................................................................................................................................................................................................................................................................................................................................................. 26 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - -
...........................................................................................................TGAATCATTAATGAGGAAAACAGGCA.................................................................................................................................................................................................................................................................................................................................................................................. 26 1 2.00 2.00 - - - - - - - - - - 1.00 - - - - - - - - - - 1.00 -
..........................................................................................................................................................................................................................................................................................................................................................................TGAGTAACATGAAGATTACGGTGGAG................................................................................................................... 26 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGGTATAAAAAGAGACTCAGAGA......................................................................... 26 1 2.00 2.00 - - - - - - - - - 2.00 - - - - - - - - - - - - -
...............................................................................................................................................................AGCTGCTATGGCTAGGGACTAGAAG............................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
.......................................................................TACCCTTCTGAGAGTTGGGTCTAACAATC................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCATTGTCTTACAGGAAAAAGCAA........................................ 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................TGAGGTAGACTTGACCGTGGCTCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - -
...........................TGCAGTGTGGGATTTCTCATGAGGaa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 26 aa 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - -
...............................................................................TGAGAGTTGGGTCTAACAATCcaa................................................................................................................................................................................................................................................................................................................................................................................................................ 24 caa 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGGTATAAAAAGAGACTCAGAGACC....................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................TGAATCATTAATGAGGAAAACAGGCAG................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
..TGTGAGGTGGCAAGGAACAGTGTCCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................................TACAGCTGCTATGGCTAGGGACTAG.................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................TCTCATGAGGTAGACTTGACCGTGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
..................................................................................................................................................................................TAGAAGACTGTCCTGGGCTGGGtgt............................................................................................................................................................................................................................................................................................................ 25 tgt 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - -
...............................................................................TGAGAGTTGGGTCTAACAATCTAACa.............................................................................................................................................................................................................................................................................................................................................................................................................. 26 a 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................GAAGACTGTCCTGGGCTGGGAATACAG........................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................TAACATGAAGATTACGGTGGAGGAGC............................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCGGTATAAAAAGAGACTCAGAGACC....................................................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGCTATGGCTAGGGACTAGAAGACTGT.......................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TACAGCTTAGTGGTAGCGCAAGCCT.................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAAGAGACTggga........................................................................... 18 ggga 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................CCCCTGGTCTCCTCTTGT................................................................................................................................................ 18 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................GTGGGATTTCTCATGAGGTAGACTTGACCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 31 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................TGCAGTGTGGGATTTCTga......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 ga 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCATTGTCTTACAGGAAAAAGC.......................................... 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGGCAACAATTACCTTGAGGAAGGCC....... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................GACTAGAAGACTGTCCTGGGCTGta............................................................................................................................................................................................................................................................................................................... 25 ta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................GAGGTAGACTTGACCGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................ACAGCTTAGTGGTAGCGCAAGCCTT................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
......AGGTGGCAAGGAACAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................TTTCTCATGAGGTAGACTTGACCGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - -
..................................TGGGATTTCTCATGAGGTAGACTTGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................TGAAGATTACGGTGGAGGAGCAATC........................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................ACTGTCCTGGGCTGGGAAT............................................................................................................................................................................................................................................................................................................ 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - -

Antisense strand
TGTGTGAGGTGGCAAGGAACAGTGTCCTGCAGTGTGGGATTTCTCATGAGGTAGACTTGACCGTGGCTCCCTACCCTTCTGAGAGTTGGGTCTAACAATCTAACCACTGAATCATTAATGAGGAAAACAGGCAGGAAAGCTTTTGCACAGACCACATACAGCTGCTATGGCTAGGGACTAGAAGACTGTCCTGGGCTGGGAATACAGCTTAGTGGTAGCGCAAGCCTTCGAGGAACTAATTTGAGTCCCTACAGCTCCTCCGTCAAGCCCTATTCTCTGCCATGGCTCCACCTTTGATTTCTCAGGAAATGTGCCCATGGAGGGAGGCACTACAGAAATGACCCCTGGTCTCCTCTTGTTTATGAGTAACATGAAGATTACGGTGGAGGAGCAATCGCTGCCTATCCCGGTATAAAAAGAGACTCAGAGACCTCTTTTCCCATTGTCTTACAGGAAAAAGCAAAGTTTCTGGGCAACAATTACCTTGAGGAAGGCCCTGTTGG
.....................................................................................................................................................................................................................................................................................................................................................................((((.(((((.............(((.((((((((....))).))).)))))............))))).))))........................................................................
.................................................................................................................................................................................................................................................................................................................................................................354................................................................................................453................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesWT1()
Testes Data. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT4()
Testes Data. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR037902(GSM510438)
testes_rep3. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
...........................................................GTGGCTCCCTACCCTTtgt......................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 tgt 3.00 0.00 - - - - - - - - - - - - 2.00 - 1.00 - - - - - - - -
.............................................................................................................................................................................................................................................................GCTCCTCCGTCAAGCCCTATT..................................................................................................................................................................................................................................... 21 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................CTACAGCTCCTCCGTCAAGCCCTA....................................................................................................................................................................................................................................... 24 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - -
.......................TGCAGTGTGGGATTTttgc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 19 ttgc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00
....................................................................................GGGTCTAACAATCTttt.................................................................................................................................................................................................................................................................................................................................................................................................................. 17 ttt 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TCTAACAATCTAACCACTGAATCATTA.................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................GGTCTCCTCTTGTTTATGAGTAACAT................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................CACTACAGAAATGACCCCTGGTCTCC...................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCCATTGTCTTACAGGAAAAAGCA......................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - -
.................AACAGTGTCCTGCAGTGTGGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - -
...........................................................GTGGCTCCCTACCCTTtgc......................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 tgc 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -