(4)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(3)
PIWI.mut
(27)
TESTES

Sense strand
GGCCTCGGGAGGACAACATTTGGAGCTTCTAAATTAGCCCCGACCCTGAGGTTAGTGAAAACGCTGCCGGAATGAGGAGGCCCTGACTCAGGGCCAAGAAACAAAGTCCGGAACAGAAACTTGCATGAAGGGAGAGGAGCCAGGAAATGCATTCAAGGATGGCAACTGGTCTAAGGATGTTTCTCCAAAGACGTGTGTGTGGCTAAGTGAAATAGTCTTCTCTGCGACACTGTGGCAAGAGGGACAAAAA
.................................................((.(((((....)))))))..........(((((((...)))))))..........((((..........(((......)))....(((.((((....((((((....)))).)).)))))))..))))........................................................................
...............................................48....................................................................................................................................182..................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
.......................................................................................................................................................TTCAAGGATGGCAACTGGTCTAAGGAT........................................................................ 27 1 11.00 11.00 4.00 - - - 2.00 - 1.00 2.00 1.00 - - - - - - - 1.00 - - - - - - - - - - -
....................................................TAGTGAAAACGCTGCCGGAATGAGGA............................................................................................................................................................................ 26 1 7.00 7.00 1.00 4.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGCGACACTGTGGCAAGAGGGACA.... 24 1 6.00 6.00 - - - 5.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.......................................................................................................AAGTCCGGAACAGAAACTTGCATGAAGGG...................................................................................................................... 29 1 6.00 6.00 - - - 5.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...........................................................................................................................................................................TAAGGATGTTTCTCCAAAGACGTGTG..................................................... 26 1 5.00 5.00 1.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.........................................................................................................................................................................................................................TTCTCTGCGACACTGTGGCAAG........... 22 1 4.00 4.00 - - - - - - - - - 4.00 - - - - - - - - - - - - - - - - - -
....................................................TAGTGAAAACGCTGCCGGAATGAGG............................................................................................................................................................................. 25 1 4.00 4.00 - 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.......................................................................................................................................................TTCAAGGATGGCAACTGGTCTAAGGA......................................................................... 26 1 4.00 4.00 2.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TGGCAACTGGTCTAAGGATGTTTCTC................................................................. 26 1 3.00 3.00 - - - - 1.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGCGACACTGTGGCAAGAGGGACAA... 25 1 3.00 3.00 - - - - - 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................AACAAAGTCCGGAACAGAAACTTGCAT............................................................................................................................ 27 1 3.00 3.00 1.00 - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................TCCGGAACAGAAACTTGCATGAAGGG...................................................................................................................... 26 1 3.00 3.00 1.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TCCGGAACAGAAACTTGCATGAAGGGA..................................................................................................................... 27 1 3.00 3.00 1.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................GTCCGGAACAGAAACTTGCATGAAGGGA..................................................................................................................... 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TCCGGAACAGAAACTTGCATGAAGGGt..................................................................................................................... 27 t 2.00 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................AACAAAGTCCGGAACAGAAACTTGCATG........................................................................................................................... 28 1 2.00 2.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................AAGTCCGGAACAGAAACTTGCATGAAGG....................................................................................................................... 28 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.......................................................................................................................................................................................TCCAAAGACGTGTGTGTGGCTAAGTGA........................................ 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TCCAAAGACGTGTGTGTGGC............................................... 20 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.................................................................................................................................................................................................................AAATAGTCTTCTCTGCGACACTGTGGCA............. 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................CTAAGTGAAATAGTCTTCTCTGCGACAC.................... 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................TGACTCAGGGCCAAGAAACAAAGTCCGG........................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................TTCTAAATTAGCCCCGACCCTGAG........................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.................................................................................................GAAACAAAGTCCGGAACAGAAACTTGC.............................................................................................................................. 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................TAGTGAAAACGCTGCCGGAATGAGGt............................................................................................................................................................................ 26 t 1.00 4.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................TGAAAACGCTGCCGGAATGAGGAGGCC........................................................................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................CGTGTGTGTGGCTAAGTGAAATAGTCT................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
............................................................................................................................................................................................................................TCTGCGACACTGTGGCAAGAGG........ 22 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.......................................................................................................................................................TTCAAGGATGGCAACTGGTCTAAGGATG....................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................TGTTTCTCCAAAGACGTGTGTGTGGC............................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.......................................................TGAAAACGCTGCCGGAATGAGGAGGCCCTGAC................................................................................................................................................................... 32 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...........................TCTAAATTAGCCCCGACCCTGAGttc..................................................................................................................................................................................................... 26 ttc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................CTAAGGATGTTTCTCCAAAGACGTGTG..................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................TGCCGGAATGAGGAGGCCCTGACTC................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...................................................................................................................................................TGCATTCAAGGATGGCAACTGGTCTA............................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................AGGAAATGCATTCAAGGA........................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.................................................................................................GAAACAAAGTCCGGAACAGAAACTTGCATG........................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................................................................................AAGGATGTTTCTCCAAAGACGTGTGT.................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................GATGGCAACTGGTCTAAGGATGTTT.................................................................... 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................AAAGTCCGGAACAGAAACTTGCATGAAGG....................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....TCGGGAGGACAACATTTGGAGCTTCTA........................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................AACAGAAACTTGCATGAAGGGAGAGGA................................................................................................................ 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................ATGCATTCAAGGATGGCAACTGGTCTA............................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................TGAAAACGCTGCCGGAATGAGGAGG.......................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..................................................................CCGGAATGAGGAGGCCCTGACTCA................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................AAGACGTGTGTGTGGCTAAG........................................... 20 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................TCTGCGACACTGTGGCAAGAGGGACA.... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGCGACACTGTGGCAAGAGGGACAAA.. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TCCAAAGACGTGTGTGTGGCTAAGTGAAA...................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TCAAGGATGGCAACTGGTCTAAGGAT........................................................................ 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGCGACACTGTGGCAAGAGGGACAAAAA 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................AGGATGGCAACTGGTCTAAGGATGTTT.................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................TGTTTCTCCAAAGACGTGTGTGTGGCT.............................................. 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................................TCCGGAACAGAAACTTGCATGAAGGGAG.................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................GCGACACTGTGGCAAGAGGGACAA... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
......................................................................................................................ACTTGCATGAAGGGAGAGGAGCCAG........................................................................................................... 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...CTCGGGAGGACAACATTTGG................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.......................................................TGAAAACGCTGCCGGAATGAGGAGGCCC....................................................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................AATGCATTCAAGGATGGCAACTGGTCTA............................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................CATGAAGGGAGAGGAGCCAGGAAAT...................................................................................................... 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TCCAAAGACGTGTGTGTGGCTAAGTG......................................... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................TCTAAATTAGCCCCGACCCTGAGGTT..................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -

Antisense strand
GGCCTCGGGAGGACAACATTTGGAGCTTCTAAATTAGCCCCGACCCTGAGGTTAGTGAAAACGCTGCCGGAATGAGGAGGCCCTGACTCAGGGCCAAGAAACAAAGTCCGGAACAGAAACTTGCATGAAGGGAGAGGAGCCAGGAAATGCATTCAAGGATGGCAACTGGTCTAAGGATGTTTCTCCAAAGACGTGTGTGTGGCTAAGTGAAATAGTCTTCTCTGCGACACTGTGGCAAGAGGGACAAAAA
.................................................((.(((((....)))))))..........(((((((...)))))))..........((((..........(((......)))....(((.((((....((((((....)))).)).)))))))..))))........................................................................
...............................................48....................................................................................................................................182..................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
...................................................................................................AACAAAGTCCGGAACAGAAACTTGCA............................................................................................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................AAAACGCTGCCGtgg..................................................................................................................................................................................... 15 tgg 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -