| Gene: Ecm1 | ID: uc008qko.1_intron_1_0_chr3_95538834_r | SPECIES: mm9 |
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(5) OTHER.mut |
(2) PIWI.ip |
(4) PIWI.mut |
(22) TESTES |
| CCCAACCTCATGGGCCAGCTCTGTGGAAGTGGAAGGGTCCTTAGCAAGCAGTGAGTCCTGATACTCTTGCCTATCCACAACCTCCTCCTCCCCGGGGGTTCCCTTGGGGAGGTCAAAATCATGACTTCCCAGTTCCATTTGAGCTGTTGGGGTGAGGAGATGTTTATTTATTGTGAAAGTTTCACTCCGTGGTCAAGGCTGTTTTGAACTGGACCAATCTTCTTTCCCCTGTACTCCAAGTAATGAGATTACAGGCATAAGCCACCGACCCCAGCAGGCTTTGGGTGCTGTGGAAGGGACAGAGACCCTGAGCTCTTCCTCTTTCATACCAACCACAGTAAACAGATTCCGGGGCTGATCCAGAATATGACCATCCGCTGCTGCGAGC ..................................................................................................................................................................................(((((......(((((.((...........)).)))))...((((((((((((((.((((.....)).)).))))))....(((..((((..((....))..))))..)))..))))))))..))))).................................................................................. ...................................................................................................................................................................164............................................................................................................................................307............................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014237(GSM319961) 10 dpp MILI-KO total. (mili testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................................................................................TTTGGGTGCTGTGGAAGGGACA....................................................................................... | 22 | 1 | 8.00 | 8.00 | 7.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................TTGGGTGCTGTGGAAGGGACAGA..................................................................................... | 23 | 1 | 4.00 | 4.00 | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................TTGGGTGCTGTGGAAGGGACA....................................................................................... | 21 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TGGAAGTGGAAGGGTCCTTAGCAAGCA.................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TGGAAGTGGAAGGGTCCTTAGCAAGCAt................................................................................................................................................................................................................................................................................................................................................. | 28 | t | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................TAAACAGATTCCGGGGCTGATCCAGAA....................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................AGCTCTGTGGAAGTGGAAGGG............................................................................................................................................................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TATTGTGAAAGTTTCACTCCGTGGTC.................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................TTGGGTGCTGTGGAAGGGACAGAt.................................................................................... | 24 | t | 1.00 | 4.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................TCCAGAATATGACCATCCGCTGCTGCGAGC | 30 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TGAACTGGACCAATCTTCTTTCCCCTG............................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................TTGGGTGCTGTGGAAGGGACAGAat................................................................................... | 25 | at | 1.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ........................................................................................................................................................................................................................................................................................TTGGGTGCTGTGGAAGGGACAG...................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................AAACAGATTCCGGGGCTGATCC........................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..........TGGGCCAGCTCTGTGGAAGTGGAAGGGgc............................................................................................................................................................................................................................................................................................................................................................. | 29 | gc | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................TTGGGTGCTGTGGAAGGGACt....................................................................................... | 21 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................CTTGCCTATCCACAccc.................................................................................................................................................................................................................................................................................................................. | 17 | ccc | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................TGGGTGCTGTGGAAGGGACAGAGAC.................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................TGGAAGTGGAAGGGTCCTTAGCAAGCAta................................................................................................................................................................................................................................................................................................................................................ | 29 | ta | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................TTTGGGTGCTGTGGAAGGGACAa...................................................................................... | 23 | a | 1.00 | 8.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................TCCGGGGCTGATCCAGA........................ | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TGGAAGTGGAAGGGTCCTTAGCAAGC................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........GGGCCAGCTCTGTGGAAGTGGAAGGGTCC............................................................................................................................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................CAGATTCCGGGGCTGATCC........................... | 19 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ............................................................................................................................................GAGCTGTTGGGGTGAG........................................................................................................................................................................................................................................ | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |
| CCCAACCTCATGGGCCAGCTCTGTGGAAGTGGAAGGGTCCTTAGCAAGCAGTGAGTCCTGATACTCTTGCCTATCCACAACCTCCTCCTCCCCGGGGGTTCCCTTGGGGAGGTCAAAATCATGACTTCCCAGTTCCATTTGAGCTGTTGGGGTGAGGAGATGTTTATTTATTGTGAAAGTTTCACTCCGTGGTCAAGGCTGTTTTGAACTGGACCAATCTTCTTTCCCCTGTACTCCAAGTAATGAGATTACAGGCATAAGCCACCGACCCCAGCAGGCTTTGGGTGCTGTGGAAGGGACAGAGACCCTGAGCTCTTCCTCTTTCATACCAACCACAGTAAACAGATTCCGGGGCTGATCCAGAATATGACCATCCGCTGCTGCGAGC ..................................................................................................................................................................................(((((......(((((.((...........)).)))))...((((((((((((((.((((.....)).)).))))))....(((..((((..((....))..))))..)))..))))))))..))))).................................................................................. ...................................................................................................................................................................164............................................................................................................................................307............................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014237(GSM319961) 10 dpp MILI-KO total. (mili testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................................................................................................................................................................................................................TCCAGAATATGACCATCCGCTG........ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................................................................................................................................................TGGGGTGAGGAGATtct................................................................................................................................................................................................................................... | 17 | tct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ........................................................................................................................GACTTCCCAGTTCCATca.......................................................................................................................................................................................................................................................... | 18 | ca | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |