(7)
OTHER.mut
(1)
OVARY
(5)
PIWI.ip
(1)
PIWI.mut
(1)
TDRD1.ip
(29)
TESTES

Sense strand
TTCCTGCGACCCGCGGTGCAGCAGCTCGACTCTCACGTGCACGCGGTCAGGTGCAGGACCGGGTTGCTGGGGGCGGGGCCTAGGGAACTGGCTTTGTAGGGGCGGGGCCCCGAAGAAATACTAGATACATTCTTGAGACACTGATGTTGAGACTGGGTAAATAGGCGGAAGGGCCTGGGTGAGGCCTTGAAGTTGAGGTTGGCTTGTCTCAGTATTTGGGGAATAAGTAGAATTCGTTTCCCGCGTCCCA
............................................................................................................................................(((((.(((((.((...((..(((((......)))))..)).)).))))).))).)).....................................................
...........................................................................................................................................140.........................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
..........................................................................................................................................CACTGATGTTGAGACTGGGTAAATAGGCGGAAGGGCCTGGGTGAGGCCTTGA............................................................ 52 1 55.00 55.00 55.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TGTTGAGACTGGGTAAATAGGCGGA................................................................................. 25 1 30.00 30.00 - 12.00 7.00 5.00 3.00 - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TGTTGAGACTGGGTAAATAGGCGGAA................................................................................ 26 1 18.00 18.00 - 9.00 1.00 - 3.00 4.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - -
................................................................................................................................................TGTTGAGACTGGGTAAATAGGCGGAAG............................................................................... 27 1 7.00 7.00 - 3.00 1.00 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................TGAGACTGGGTAAATAGGCGGAAGGGC............................................................................ 27 1 6.00 6.00 - 1.00 - - - 1.00 1.00 - 1.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................TGAGACTGGGTAAATAGGCGGAAGGG............................................................................. 26 1 6.00 6.00 - 6.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................TGAGACTGGGTAAATAGGCGGAAGGGCCTGG........................................................................ 31 1 5.00 5.00 - 4.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTTGGGGAATAAGTAGAATTCGTTTCCC........ 28 1 4.00 4.00 - - - - - - - - - - - - - 4.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................TGAGACTGGGTAAATAGGCGGAAGG.............................................................................. 25 1 4.00 4.00 - - - - - 1.00 - 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - -
...........................................................................................................................................................................................TGAAGTTGAGGTTGGCTTGTCTCAGT..................................... 26 1 4.00 4.00 - - - - - - - - - - 1.00 - - - - - - - 1.00 - 1.00 - - 1.00 - - - - - -
...........................................................................................................................................ACTGATGTTGAGACTGGGTAAATAGGC.................................................................................... 27 1 3.00 3.00 - - 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................TAAGTAGAATTCGTTTCCCGCGTCCC. 26 1 3.00 3.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - 1.00 - - - -
...............................................................................................................................................................................................................................TAAGTAGAATTCGTTTCCCGCGTCCCA 27 1 3.00 3.00 - - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TGTTGAGACTGGGTAAATAGGCGG.................................................................................. 24 1 2.00 2.00 - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................ACACTGATGTTGAGACTGGG............................................................................................. 20 1 2.00 2.00 - - - - - - - - - - - - - - 1.00 - - - - - - - 1.00 - - - - - - -
.............................................................................................................................................TGATGTTGAGACTGGGTAAATAGGCGGAA................................................................................ 29 1 2.00 2.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - 1.00 -
.....................................................................................................................................TGAGACACTGATGTTGAGACTGGGT............................................................................................ 25 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTTGGGGAATAAGTAGAATTCGTTTCC......... 27 1 2.00 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - -
...............................CTCACGTGCACGCGGTCAGa....................................................................................................................................................................................................... 20 a 2.00 0.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................TAAGTAGAATTCGTTTCCCGCGTC... 24 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TGATGTTGAGACTGGGTAAATAGGCGG.................................................................................. 27 1 2.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.............................................................................................................................................TGATGTTGAGACTGGGTAAATAGGC.................................................................................... 25 1 2.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..........................................................................................................................................CACTGATGTTGAGACTGGGTAAATAGG..................................................................................... 27 1 2.00 2.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GAGACTGGGTAAATAGGC.................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
................................................................................................................................................TGTTGAGACTGGGTAAATAGGCGGAAGG.............................................................................. 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................AGGCCTTGAAGTTGAGGT................................................... 18 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGAGACACTGATGTTGAGACTGGGTA........................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TGAAGTTGAGGTTGGCTTGTCTCAG...................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
......................................................................GGGCGGGGCCTAGGGcgcg................................................................................................................................................................. 19 cgcg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...........................................................................................................................GATACATTCTTGAGACACTGATGTTGAGACTGGG............................................................................................. 34 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................GAGACACTGATGTTGAGACTG............................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................................................TGATGTTGAGACTGGGTAAATAGGCG................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTTGGGGAATAAGTAGAATTCGTTTC.......... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TGATGTTGAGACTGGGTAAATAGGCGGAAt............................................................................... 30 t 1.00 2.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................TGTTGAGACTGGGTAAATAGGggga................................................................................. 25 ggga 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TGATGTTGAGACTGGGTAAATAGGCGGA................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
............................................GGTCAGGTGCAGGACCGGGTTGCTGG.................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGAGACACTGATGTTGAGA.................................................................................................. 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.............................................................................................................................................TGATGTTGAGACTGGGTAAATAGGCGt.................................................................................. 27 t 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...................................................................................................................................................TGAGACTGGGTAAATAGGCGGAAGGGCCTG......................................................................... 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................CTCGACTCTCACGTGCACGCGGTCAG........................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................................................................................................................................................................................................GTAGAATTCGTTTCCCGC...... 18 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TGAGGTTGGCTTGTCTCAGTATTTGG............................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................TGAGACTGGGTAAATAGGCGGAAGGGCCTt......................................................................... 30 t 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................TGGGGAATAAGTAGAATT................ 18 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................GAGACACTGATGTTGAGACTGGGTAAAT........................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.......................................................................................................................................AGACACTGATGTTGAGACTG............................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................CTGATGTTGAGACTGGGTAAATAGGCGGAAGG.............................................................................. 32 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................TTGAGACTGGGTAAATAGG..................................................................................... 19 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....TGCGACCCGCGGTGCAGCAGCTCGACTC.......................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGTCTCAGTATTTGGGGAATAAGTAGAATT................ 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.................................................................................................................................................GTTGAGACTGGGTAAATAGGCGGA................................................................................. 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TTGAGACACTGATGTTGAGACTGGGT............................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
......................................................................................................................................GAGACACTGATGTTGAGACTGGGTA........................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GAGACTGGGTAAATAGGCGGA................................................................................. 21 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................ACTGATGTTGAGACTGG.............................................................................................. 17 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....TGCGACCCGCGGTGCAGCAGCTCGACT........................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
TTCCTGCGACCCGCGGTGCAGCAGCTCGACTCTCACGTGCACGCGGTCAGGTGCAGGACCGGGTTGCTGGGGGCGGGGCCTAGGGAACTGGCTTTGTAGGGGCGGGGCCCCGAAGAAATACTAGATACATTCTTGAGACACTGATGTTGAGACTGGGTAAATAGGCGGAAGGGCCTGGGTGAGGCCTTGAAGTTGAGGTTGGCTTGTCTCAGTATTTGGGGAATAAGTAGAATTCGTTTCCCGCGTCCCA
............................................................................................................................................(((((.(((((.((...((..(((((......)))))..)).)).))))).))).)).....................................................
...........................................................................................................................................140.........................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
.........CCCGCGGTGCAGCAGCTCGACTCTCA....................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - -
..................CAGCTCGACTCTCACGTGCACatg................................................................................................................................................................................................................ 24 atg 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................GTTGCTGGGGGCGGgccc.............................................................................................................................................................................. 18 gccc 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -