| Gene: Exosc8 | ID: uc008pfq.1_intron_1_0_chr3_54533223_r | SPECIES: mm9 |
|
|
|
(5) OTHER.mut |
(6) PIWI.ip |
(2) PIWI.mut |
(27) TESTES |
| TTGAATGTTAGAACAAACCCAGTTGCTACTTCCTTTGCTGTGTTTGATGAGTAAGTAAACCAAATGTAACATTCTAGGTTCCAAGTTAAGGCCTTGTTTTGTGATGATTTGAGCTGTGGCCCTTGGTCAGACCTTCCACTTGCAGAGGCATTCTGATATATAGAACCAGTTACTTCCCCCTAGGTTTCCTTACGCTTTTCCTGGTGGTAAGGGGATGTATGGGGCCTGTTCACACTAGGCACGCGCTCCACTGCTGCCTATGCTCTAAGCCTCGCTACAGTGTAATTTTCTGAAGCTGCCTTCAGTCCTTGCTGAGGATGATGTTCTATTCCCAAGCTGAAGAGTGAGGTGTTTACAAGGGCTCCACTGTGGGGTGCTGCTGCTCTGGCTTCCTCCAGTCCTGAATGAGCTCTTCCAGACCCAGGCTGAAGCAGGCATGTCTTTTAGAACTGTTTGGAATTAGTCTGCCCCTAGAATTGATGCCCACTCCCCCACCCCACCCTTTTGAATGTAGCACTCTACTGATAGTCGATCCTACCGGCGAGGAGGAGCACCTGTCCACAG .....................................................................................................................................................................................................................................................................................................................................................................................................................................((((((((..((((((..((.....))..))))))...))))))))................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................415................................................................................................514................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................................................................................................................................GAGGATGATGTTCTATTCCCAAGCTGAAG.............................................................................................................................................................................................................................. | 29 | 1 | 22.00 | 22.00 | 6.00 | - | 2.00 | 1.00 | 6.00 | 2.00 | 2.00 | - | - | 1.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................TGAGGATGATGTTCTATTCCCAAGCTGAAG.............................................................................................................................................................................................................................. | 30 | 1 | 16.00 | 16.00 | 1.00 | 5.00 | 3.00 | 2.00 | - | 1.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ......................................................................................................................................................................................................................................................................................................................GCTGAGGATGATGTTCTATTCCCAAGCTGAAG.............................................................................................................................................................................................................................. | 32 | 1 | 4.00 | 4.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAGTCGATCCTACCGGCGAGGAGG............... | 27 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................TGCTGAGGATGATGTTCTATTCCCAAGCTGAAG.............................................................................................................................................................................................................................. | 33 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TAGAACAAACCCAGTTGCTACTTCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAGTCGATCCTACCGGCGAGGAG................ | 26 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................CTCGCTACAGTGTAATTTTCTGA............................................................................................................................................................................................................................................................................... | 23 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCGATCCTAagag....................... | 16 | agag | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGCTCTTCCAGACCCAGGCTGAAGCAG.................................................................................................................................. | 32 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................TGCTGAGGATGATGTTCTATTCCCAAGCTGAAGA............................................................................................................................................................................................................................. | 34 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .TGAATGTTAGAACAAACCCAGTTGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGCTCTTCCAGACCCAGGC.......................................................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGATAGTCGATCCTACCGGCG..................... | 24 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTTCCAGACCCAGGCTGA....................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................TGAGGATGATGTTCTATTCCCAAGCTGAtg.............................................................................................................................................................................................................................. | 30 | tg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAGTCGATCCTACCGGCGAGGA................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGCGAGGAGGAGCACCTGTCCt... | 26 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....TGTTAGAACAAACCCAGTTGCTACTTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGATAGTCGATCCTACCGGCGAGG.................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............CAAACCCAGTTGCTACTTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................GTTTTGTGATGATTTGAGCTGTGGCCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TTTTGTGATGATTTGAGCTGTGGCCCTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAGTCGATCCTACCGGCGAGGAGGAGC............ | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGATAGTCGATCCTACCGGCGA.................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................TGTGATGATTTGAGCTGTGGCCCTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TTGGTCAGACCTTCCACTTGCAGAGGCATTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTACTGATAGTCGATCCTACCGGCG..................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....TGTTAGAACAAACCCAGTTGCTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTGATAGTCGATCCTACCGGCG..................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGATAGTCGATC.............................. | 15 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTACTGATAGTCGATCCTACCGGC...................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................GCTGAGGATGATGTTCTATTCCCAAGCTGAAGAGa........................................................................................................................................................................................................................... | 35 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TTGAATGTTAGAACAAACCCAGTTGCTACTTCCTTTGCTGTGTTTGATGAGTAAGTAAACCAAATGTAACATTCTAGGTTCCAAGTTAAGGCCTTGTTTTGTGATGATTTGAGCTGTGGCCCTTGGTCAGACCTTCCACTTGCAGAGGCATTCTGATATATAGAACCAGTTACTTCCCCCTAGGTTTCCTTACGCTTTTCCTGGTGGTAAGGGGATGTATGGGGCCTGTTCACACTAGGCACGCGCTCCACTGCTGCCTATGCTCTAAGCCTCGCTACAGTGTAATTTTCTGAAGCTGCCTTCAGTCCTTGCTGAGGATGATGTTCTATTCCCAAGCTGAAGAGTGAGGTGTTTACAAGGGCTCCACTGTGGGGTGCTGCTGCTCTGGCTTCCTCCAGTCCTGAATGAGCTCTTCCAGACCCAGGCTGAAGCAGGCATGTCTTTTAGAACTGTTTGGAATTAGTCTGCCCCTAGAATTGATGCCCACTCCCCCACCCCACCCTTTTGAATGTAGCACTCTACTGATAGTCGATCCTACCGGCGAGGAGGAGCACCTGTCCACAG .....................................................................................................................................................................................................................................................................................................................................................................................................................................((((((((..((((((..((.....))..))))))...))))))))................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................415................................................................................................514................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................................................................................................................................................................................................................TGTGGGGTGCTGCTtagc....................................................................................................................................................................................... | 18 | tagc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .................CCCAGTTGCTACTTCCTTTGCTGTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ........................................................................................................................CCTTGGTCAGACCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................ | 16 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................GCCTTCAGTCCTTGCtga............................................................................................................................................................................................................................................................ | 18 | tga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............CAAACCCAGTTGCTACTTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCACTCCCCCACCC................................................................... | 17 | 12 | 0.08 | 0.08 | - | - | - | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |