(1)
OTHER.ip
(7)
OTHER.mut
(5)
PIWI.ip
(1)
PIWI.mut
(1)
TDRD1.ip
(30)
TESTES

Sense strand
TTTGCTTTTTCCAGCAACAAGCTGTAGAACAAGCTTTGGATTGCGCAGAGGTGAGCCCTACTGATTAAATGTTGAAATACTGGGGTTTGTAACTGACAGAAAGTCCTTAATAGGACATTTTGATAACCCTCAAGAGAACAGTATTTTAAACCAGACCACAGAATTTGTAAAGTTGTTTTTCTATCTTGATGAGTTTCTCTAAAATACCTTAAAATATGGGTCACTGCACTCAAATGTGTAATTTTAAAATAAATTTAAAACTTTTAGAATATATTTGTCCTGTGGAATTGCATTTTATGGTACTAAAACACTGGGCTGGGTCTTGGGCTCTATGGCCTGTGTACAAGCGTGAGCTCAGGCTTGTCAGAGCCTAGGAGACTGAGTGGGCTGCTCTCACTGTCCTGCTGCGGGCTTGCAGCTCGCTTGCACTCACTCGTAGGAAAGCGGAAGGCAAGCCCTTTGACCAACTTCTCTGTTTCAGTACATCGTGGAAAGTGCTCAGCAGAGACCTCCTAAAAGGAAATACCTGTC
................................................................................................................................................................................................................................................................................................................................................................................................(((((((..((.((.((((((.((((((.....)))))).((....))...)))))).))..))..))).))))..(((..(((......))))))...................................................
.............................................................................................................................................................................................................................................................................................................................................................................................382................................................................................................481................................................
Size Perfect hit Total Norm Perfect Norm SRR363964(GSM822766)
AdultGlobal 5'-RACEread_length: 105. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
mjTestesWT3()
Testes Data. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475281(GSM475281)
total RNA. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
.............................................................................................................................................................................................................................................................................................................ACTAAAACACTGGGCTGGGTCTTGGGCTCTATGGCCTGTGTACAAGCGTGAG.................................................................................................................................................................................. 52 1 115.00 115.00 115.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGGAAAGTGCTCAGCAGA......................... 21 1 7.00 7.00 - - 7.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................GCTTTGGATTGCGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 18 1 6.00 6.00 - 5.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
......................TGTAGAACAAGCTTTGGATTGCGCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 5.00 5.00 - - - 1.00 3.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................ACAAGCTGTAGAACAAGCTTTGGATTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 3.00 3.00 - - - - 1.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
........................TAGAACAAGCTTTGGATTGCGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 26 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................TGTAGAACAAGCTTTGGATTGCGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 2.00 2.00 - - - - - - - - - - - - - - - 1.00 - - - 1.00 - - - - - - - - - -
.......................GTAGAACAAGCTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
.................CAAGCTGTAGAACAAGCTTTGGATTGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 2.00 2.00 - - - - 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...............AACAAGCTGTAGAACAAGCTTTGGATcg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 28 cg 2.00 2.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - 1.00 - - - - - -
...............AACAAGCTGTAGAACAAGCTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................ATGGCCTGTGTACAAGCGTGAGCTCA.............................................................................................................................................................................. 26 1 2.00 2.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
........................TAGAACAAGCTTTGGATTGCGCAGAGt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 t 2.00 3.00 - - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCGTGGAAAGTGCTCAGCAGA......................... 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATCGTGGAAAGTGCTCAGCAGAGACCTC................... 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..............CAACAAGCTGTAGAACAAGCTTTGGATTGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 31 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................GTAGAACAAGCTTTGGATTGCGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
........................TAGAACAAGCTTTGGATTGCGCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................TGTAGAACAAGCTTTGGATcgcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 cgcg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
..................................TTTGGATTGCGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 16 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................CAAGCTTTGGATTGttca.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 ttca 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...................AGCTGTAGAACAAGCTTTGGATTGCGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...............AACAAGCTGTAGAACAAGCTTTGGATc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 c 1.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................TGTAGAACAAGCTTTGGATTGCGCAGAt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 t 1.00 5.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TATTTTAAACCAGACCACAGAATTTGTAAAGT...................................................................................................................................................................................................................................................................................................................................................................... 32 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................GTAGAACAAGCTTTGGATTGCGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................GTAGAACAAGCTTTGGATTGCGCAGAGta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 ta 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................TGTAGAACAAGCTTTGGATTGCGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................TGTAGAACAAGCTTTGGATTGCGCAGAtt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 29 tt 1.00 5.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................CAAGCTGTAGAACAAGCTTTGt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 22 t 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTCAGCAGAGACCT.................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGGAAAGTGCTCAGCAGAGAC...................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGCTCAGCAGAGA....................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCGTGGAAAGTGCTCAGCAGAGACC..................... 30 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............GCAACAAGCTGTAGAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..................AAGCTGTAGAACAAGCTTTGGATcgc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 cgc 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
................ACAAGCTGTAGAACAAGCTTTGGATcgcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 cgcg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.............................................................................................................................................................ACAGAATTTGTAAAGTTGTTTTTCT............................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................AGCTGTAGAACAAGCTTTGGATTGCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................CAAGCTGTAGAACAAGCTTTGGATTGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
............AGCAACAAGCTGTAGAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................TAGAACAAGCTTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.50 -

Antisense strand
TTTGCTTTTTCCAGCAACAAGCTGTAGAACAAGCTTTGGATTGCGCAGAGGTGAGCCCTACTGATTAAATGTTGAAATACTGGGGTTTGTAACTGACAGAAAGTCCTTAATAGGACATTTTGATAACCCTCAAGAGAACAGTATTTTAAACCAGACCACAGAATTTGTAAAGTTGTTTTTCTATCTTGATGAGTTTCTCTAAAATACCTTAAAATATGGGTCACTGCACTCAAATGTGTAATTTTAAAATAAATTTAAAACTTTTAGAATATATTTGTCCTGTGGAATTGCATTTTATGGTACTAAAACACTGGGCTGGGTCTTGGGCTCTATGGCCTGTGTACAAGCGTGAGCTCAGGCTTGTCAGAGCCTAGGAGACTGAGTGGGCTGCTCTCACTGTCCTGCTGCGGGCTTGCAGCTCGCTTGCACTCACTCGTAGGAAAGCGGAAGGCAAGCCCTTTGACCAACTTCTCTGTTTCAGTACATCGTGGAAAGTGCTCAGCAGAGACCTCCTAAAAGGAAATACCTGTC
................................................................................................................................................................................................................................................................................................................................................................................................(((((((..((.((.((((((.((((((.....)))))).((....))...)))))).))..))..))).))))..(((..(((......))))))...................................................
.............................................................................................................................................................................................................................................................................................................................................................................................382................................................................................................481................................................
Size Perfect hit Total Norm Perfect Norm SRR363964(GSM822766)
AdultGlobal 5'-RACEread_length: 105. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
mjTestesWT3()
Testes Data. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475281(GSM475281)
total RNA. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTGTTTCAGTAgcgt................................................ 20 gcgt 4.00 0.00 - - - - - - 3.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTGTTTCAGTAgcgc................................................ 20 gcgc 2.00 0.00 - - - - - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGTTTCAGTAtgtt................................................ 18 tgtt 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTGTTTCAGTAgc................................................ 18 gc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTGTTTCAGTcgc................................................. 19 cgc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTCACTGTCCT................................................................................................................................ 16 7 0.14 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.14