| Gene: Spry1 | ID: uc008pax.1_intron_0_0_chr3_37538987_f | SPECIES: mm9 |
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(6) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(21) TESTES |
| TGCGAGCGGCGTGCATGTGCCGGGAGGGCCGGCCCCAGGCTCTGCACTAGGTAAGAGCCTTCCCCTCCCGCCGAGGACCTGGCAAGATCAGGTGAGAATGGTGCTTTATTTTATTTTATTTTCGAGGAGCTGGACGTTTTCGGAGCTGGCTCTAGCTCTGTGCCCGGCGCTTTGCGGTCGGCCCTGCAGCGAGTTCCGTAGCCAGGCAGCGAGTTACGCGTGTGCGAACGCGGGCTGGCACCGCCGCGCACCCGCGTGTCTGTGCGCATTGTTGGGGACCGACCCGCCGGGCGCTCGTGCCAGACCTGACTTTTCCCGTCCCTGCGTGCGGGCTTGCCTCGCGCAGACGCGTCTCTCGGACGCGCTTTGGACTGCGGGGCATTCCGTGGGGGCAAAACGTGCACGGCCGTGTGTGTCCGGGGCTCGTGGCTGTCCATCTCGGCGAGCAGGACAGCGTCCCGGGCTGGCAAGGGACTCACGTGTTTCTGTCTCTGCTCGTCTGCAGCCGGCGTGGCGACTGCGGGGACGCGGACCTGCGGGGACCCGAGAGCCCGG .....................................................................................................................................................................................................................................................................................................................................................................................................................((((.....(((((((((.....(((((((..(((...)))..)))))))))))))))))))).((..((......))..))....((((......)))).................................................. .....................................................................................................................................................................................................................................................................................................................................................................................................................406................................................................................................505................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................................................TCTGTGCGCATTGTTGGGGACCGACCC.............................................................................................................................................................................................................................................................................. | 27 | 1 | 13.00 | 13.00 | 6.00 | 1.00 | 3.00 | - | - | - | - | - | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................TCTCGGACGCGCTTTGGACTGCGGGG................................................................................................................................................................................ | 26 | 1 | 7.00 | 7.00 | - | - | - | 1.00 | 1.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................TGGACTGCGGGGCATTCCGTGGGGGC.................................................................................................................................................................. | 26 | 1 | 6.00 | 6.00 | - | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................TCTGTGCGCATTGTTGGGGACCGACC............................................................................................................................................................................................................................................................................... | 26 | 1 | 6.00 | 6.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................TCGGACGCGCTTTGGACTGCGGGGC............................................................................................................................................................................... | 25 | 1 | 4.00 | 4.00 | - | - | - | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................TGCACTAGGTAAGAGCCTTCCCCTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................TGCCTCGCGCAGACGCGTCTCTCGGAC.................................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................TCTCGGACGCGCTTTGGA........................................................................................................................................................................................ | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................TGCCTCGCGCAGACGCGTCTCTCGG.................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................TTGGACTGCGGGGCATTCCGTGGG..................................................................................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................GAGGAGCTGGACGTTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGTCCATCTCGGCGAGCAGGAa....................................................................................................... | 26 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAAGAGCCTTCCCCTCCCcgt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | cgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACCTGCGGGGACCCGAGAG..... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................GGACGTTTTCGGAGCTGGCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................TGCCTCGCGCAGACGCGTCTCTCGGA................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TAGCTCTGTGCCCGGCGCTTTGCGGTC........................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................TGCAGCGAGTTCCGTAGCCAGGCAGC......................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................AGGAGCTGGACGTTTTCGGAGCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGTCTCTGCTCGTCTGCAt.................................................. | 24 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................TGGACTGCGGGGCATTCCGTGGG..................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTCTCTGCTCGTCTGCAGCCGG.............................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TGGACGTTTTCGGAGCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................TTTGCGGTCGGCCCTGCAGCGAGTT........................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTCTGCAGCCGGtgt........................................... | 18 | tgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGCGAGCAGGACAGCGTCCCGG............................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................TCCCCTCCCGCCGgcct.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | gcct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGTCTCTGCTCGTCTGCAGCCGG.............................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGTCCATCTCGGCGAGCAGGA........................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...............................................................................................................................................................................................................................GCGAACGCGGGCTaga............................................................................................................................................................................................................................................................................................................................ | 16 | aga | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................GAGTTCCGTAGCgttc............................................................................................................................................................................................................................................................................................................................................................. | 16 | gttc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGTCTCTGCTCGTCTGC.................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................TCGGACGCGCTTTGGACTGCGGGGCAT............................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TAGCTCTGTGCCCGGCGCTTTGCGGT......................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGCTCGTCTGC.................................................... | 15 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGCGAGCGGCGTGCATGTGCCGGGAGGGCCGGCCCCAGGCTCTGCACTAGGTAAGAGCCTTCCCCTCCCGCCGAGGACCTGGCAAGATCAGGTGAGAATGGTGCTTTATTTTATTTTATTTTCGAGGAGCTGGACGTTTTCGGAGCTGGCTCTAGCTCTGTGCCCGGCGCTTTGCGGTCGGCCCTGCAGCGAGTTCCGTAGCCAGGCAGCGAGTTACGCGTGTGCGAACGCGGGCTGGCACCGCCGCGCACCCGCGTGTCTGTGCGCATTGTTGGGGACCGACCCGCCGGGCGCTCGTGCCAGACCTGACTTTTCCCGTCCCTGCGTGCGGGCTTGCCTCGCGCAGACGCGTCTCTCGGACGCGCTTTGGACTGCGGGGCATTCCGTGGGGGCAAAACGTGCACGGCCGTGTGTGTCCGGGGCTCGTGGCTGTCCATCTCGGCGAGCAGGACAGCGTCCCGGGCTGGCAAGGGACTCACGTGTTTCTGTCTCTGCTCGTCTGCAGCCGGCGTGGCGACTGCGGGGACGCGGACCTGCGGGGACCCGAGAGCCCGG .....................................................................................................................................................................................................................................................................................................................................................................................................................((((.....(((((((((.....(((((((..(((...)))..)))))))))))))))))))).((..((......))..))....((((......)))).................................................. .....................................................................................................................................................................................................................................................................................................................................................................................................................406................................................................................................505................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................................................................................................GGACCGACCCGCtgt............................................................................................................................................................................................................................................................................ | 15 | tgt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCCCGGGCTGGCAAGGGACTCACGTGTT....................................................................... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .....................................................................................................................................................................................................................................................................................ACCGACCCGCCGGGCGCT.................................................................................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................GCCGCGCACCCGCGtccc........................................................................................................................................................................................................................................................................................................... | 18 | tccc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................CCGCCGCGCACCCGCGTGTCTGTGC.................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................GGACCGACCCGCtgtc............................................................................................................................................................................................................................................................................ | 16 | tgtc | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |