| Gene: Prkci | ID: uc008ovs.1_intron_9_0_chr3_30937470_f | SPECIES: mm9 |
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(5) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(18) TESTES |
| AATCACCCTTTTCTTGTCGGGCTGCATTCTTGCTTCCAGACAGAAAGCAGGTAAGGCTAAAGGATAACAAGTGTCATTAGGTGTCATACTTTTTGGCATGTTATATAAGAAGACTCTGTTTCCCATAATTCTTGAAGTAGGAGGACTACTTATAATTTCCTGCTACAATCAGTGATACCAATTTAACACCAGTCACTCATAGACATATAAGGAAGAAAAAGGGAGCGGGGAGGGGCTCTTCAGAAGCAGCAGTAGCTAGCCAACCCTTTACGTATCCTCCGGATTCTCGCCTTATGACATAATGTCTCATTACCTGAAGTGACATTTAAACATGACTCACCTAGTTCCTAAGATTGCAGTGAAACTCCTAAGAGTGGGATCGATTGGTGTAGAAGTAGAAGTTGGGTCACACCGGGTCACATGTGTCCACTAAGGGCAAAGGGTGAGTCATCTCAAGAGCCTTCATGCTGCTCTGTGGGAGATGCCAGGAGCCGTACGACTAACTGACGTGTGCTTCTTGCCTCTTCTCAGGTTGTTTTTTGTCATAGAATATGTAAATGGAGGGGACCTCATGTTTCATA ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((.((((((.((.(((((.((((((.........))))))))))).)).))))))))).................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................469...........................................................531................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesWT2() Testes Data. (testes) | GSM475281(GSM475281) total RNA. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTTCTTGCCTCTTCTCAGt................................................. | 23 | t | 8.00 | 0.00 | - | 1.00 | - | - | - | 1.00 | 1.00 | 2.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | 1.00 | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGATGCCAGGAGCCGTAC.................................................................................... | 24 | 1 | 5.00 | 5.00 | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGATGCCAGGAGCCGTACt................................................................................... | 25 | t | 5.00 | 5.00 | 1.00 | - | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGATGCCAGGAGCCGT...................................................................................... | 22 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGATGCCAGGAGCCGTAt.................................................................................... | 24 | t | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATAGAATATGTAAATGGAGGGGAC............. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGATGCCAGGAGCCGTACGA.................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATAGAATATGTAAATGGAGGGGACCT........... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGATGCCAGGAGCCGTAt.................................................................................... | 23 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTGGGAGATGCCAGGAGCCGTA..................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTTCTTGCCTCTTCTCAGtt................................................ | 24 | tt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGATGCCAGGAGCCGTAa.................................................................................... | 24 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................ATAGACATATAAGGtaga............................................................................................................................................................................................................................................................................................................................................................................. | 18 | taga | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAGATGCCAGGAGCCGTAC.................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGATGCCAGGAGCCGTAttt.................................................................................. | 26 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .............TTGTCGGGCTGCATTCTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGATGCCAGGAG.......................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTTCTTGCCTCTTCTCA................................................... | 21 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AATCACCCTTTTCTTGTCGGGCTGCATTCTTGCTTCCAGACAGAAAGCAGGTAAGGCTAAAGGATAACAAGTGTCATTAGGTGTCATACTTTTTGGCATGTTATATAAGAAGACTCTGTTTCCCATAATTCTTGAAGTAGGAGGACTACTTATAATTTCCTGCTACAATCAGTGATACCAATTTAACACCAGTCACTCATAGACATATAAGGAAGAAAAAGGGAGCGGGGAGGGGCTCTTCAGAAGCAGCAGTAGCTAGCCAACCCTTTACGTATCCTCCGGATTCTCGCCTTATGACATAATGTCTCATTACCTGAAGTGACATTTAAACATGACTCACCTAGTTCCTAAGATTGCAGTGAAACTCCTAAGAGTGGGATCGATTGGTGTAGAAGTAGAAGTTGGGTCACACCGGGTCACATGTGTCCACTAAGGGCAAAGGGTGAGTCATCTCAAGAGCCTTCATGCTGCTCTGTGGGAGATGCCAGGAGCCGTACGACTAACTGACGTGTGCTTCTTGCCTCTTCTCAGGTTGTTTTTTGTCATAGAATATGTAAATGGAGGGGACCTCATGTTTCATA ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((.((((((.((.(((((.((((((.........))))))))))).)).))))))))).................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................469...........................................................531................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesWT2() Testes Data. (testes) | GSM475281(GSM475281) total RNA. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
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| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAAATGGAGGGcatg................ | 19 | catg | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................TCAGTGATACCAATacgt............................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | acgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |