| Gene: mKIAA0889 | ID: uc008nol.1_intron_0_0_chr2_156844236_r.3p | SPECIES: mm9 |
|
|
|
(3) OTHER.mut |
(4) PIWI.ip |
(15) TESTES |
| AACCTCGGACAGCGTCTGCCTTCTCTGTGCCTTGCAGACTTTATTAGAATGTGGATCCATTGTTGCCCTAATAGGAGTAATATGGTCTAGAGCAGAGTTGCAGCTCCTGCCTCAGCATGAGACATGGCTGAATTCTGGTGCCTGGGTGGCTGTAGCCCAGGCTTCAGGCTGCTGCTGATCTCTTCTCTGTCTCTCCCCAGGATGCCGTATGTGACTGTAGCGCCCAGTCACTTGCCTCCTGCTTCATCCG ......................................................................................................................((((((.((..((...((((.((((((((.......)))))))).))))((....)).....))..)).))))))......................................................... ................................................................................................................113....................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................TGAGACATGGCTGAATTCTGGTGCCT........................................................................................................... | 26 | 1 | 32.00 | 32.00 | 12.00 | 15.00 | 1.00 | 1.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................TGAGACATGGCTGAATTCTGGTGCC............................................................................................................ | 25 | 1 | 10.00 | 10.00 | 6.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .....................................................................................................................TGAGACATGGCTGAATTCTGGTGC............................................................................................................. | 24 | 1 | 5.00 | 5.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TAGGAGTAATATGGTCTAGAGCAGAG......................................................................................................................................................... | 26 | 1 | 4.00 | 4.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................................................TGGTCTAGAGCAGAGTTGCAGCTCCT.............................................................................................................................................. | 26 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................TAATATGGTCTAGAGCAGAGTTGCAGC.................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGCTGAATTCTGGTGCCTGGGTGGCT................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................GAGTAATATGGTCTAGAGCAGAGTTG...................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TCTGTGCCTTGCAGACTTTATTAGAAT........................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................TAATAGGAGTAATATGGTCTAGAGCAG........................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................TCTCTCCCCAGGATGCCGTATGTGAC................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................TAGGAGTAATATGGTCTAGAGCAGAGT........................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................CAGGATGCCGTATGTGACTGTAGCGCC.......................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................TATGGTCTAGAGCAGAGTTGCAGCTCCT.............................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................TATTAGAATGTGGATCCATTGgtgc........................................................................................................................................................................................ | 25 | gtgc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................................................................................TGAGACATGGCTGAATTCTGGTGCCTGG......................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................TAATAGGAGTAATATGGTCTAGAGC............................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................TGGTCTAGAGCAGAGTTGCAGCTCCTG............................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .........................................................................................................................................................................TGCTGCTGATCTCTTCTCTGTCT.......................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ....TCGGACAGCGTCTGCCTTCTCTGTGC............................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................CCCCAGGATGCCGTATGTGACTGTAGC............................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGGTCTAGAGCAGAGTTGCAGCTCCTa............................................................................................................................................. | 27 | a | 1.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................GTAATATGGTCTAGAGCAGAGTTGCA.................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGCTGAATTCTGGTGCCTGGGTGGC.................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................TATGGTCTAGAGCAGAGTTGCAGCTCC............................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................TAGGAGTAATATGGTCTAGAGCAGA.......................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GGATGCCGTATGTGACTGTAGC............................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................................................GAGACATGGCTGAATTCTGGTGCC............................................................................................................ | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGCTGAATTCTGGTGCCTGGGTGGCTGT................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TGAGACATGGCTGAATTCTGGTGCCTt.......................................................................................................... | 27 | t | 1.00 | 32.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TGAGACATGGCTGAATTCTGGTGCCTaa......................................................................................................... | 28 | aa | 1.00 | 32.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................TCAGGCTGCTGCTGATCTCTTCTCTG............................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................ATTAGAATGTGGATCCATTGTTGC........................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGCTGAATTCTGGTGCCTGGGTGGCTG.................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................CGTATGTGACTGTAGCGC........................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .........................TGTGCCTTGCAGACTTTATTAGAATGT...................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................ATTCTGGTGCCTGGG........................................................................................................ | 15 | 8 | 0.12 | 0.12 | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AACCTCGGACAGCGTCTGCCTTCTCTGTGCCTTGCAGACTTTATTAGAATGTGGATCCATTGTTGCCCTAATAGGAGTAATATGGTCTAGAGCAGAGTTGCAGCTCCTGCCTCAGCATGAGACATGGCTGAATTCTGGTGCCTGGGTGGCTGTAGCCCAGGCTTCAGGCTGCTGCTGATCTCTTCTCTGTCTCTCCCCAGGATGCCGTATGTGACTGTAGCGCCCAGTCACTTGCCTCCTGCTTCATCCG ......................................................................................................................((((((.((..((...((((.((((((((.......)))))))).))))((....)).....))..)).))))))......................................................... ................................................................................................................113....................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|