(2)
OTHER.mut
(1)
OVARY
(5)
PIWI.ip
(3)
PIWI.mut
(20)
TESTES

Sense strand
TCCAAAAACCAAAAAAAAAAAAAAAAATAGTGGCCAAGTTTGTTCCAGAGGTAAGCAACCACTTTCTGATTGGATTTGAAGCCAATCCTATGAAGGGATTCCTCTCTGATACTGTAAATCTGGTCAAATCCCATGGTTGGAAAGGCTATAGGCCCTAGTTGGGAAGCTACGCTGTTCTTTTGGTAAATAGACATCATGTACCCATCAAATTGAAATTAATTAAGTGGGGCTTTTATAGGCCTATGTCTCT
...............................................................................((((..(((......((((((...((..(((.......))).))...))))))......)))..)))).....(((.....))).......................................................................................
.......................................................................72..........................................................................................164....................................................................................
Size Perfect hit Total Norm Perfect Norm SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037901(GSM510437)
testes_rep2. (testes)
...........................TAGTGGCCAAGTTTGTTCCAGAGGT...................................................................................................................................................................................................... 25 1 8.00 8.00 - 2.00 2.00 2.00 - - - - - 2.00 - - - - - - - - - - -
...........................TAGTGGCCAAGTTTGTTCCAGAGGTA..................................................................................................................................................................................................... 26 1 7.00 7.00 - 1.00 2.00 1.00 1.00 - - - - - - - - 1.00 - - - 1.00 - - -
.....................................................................................................................................TGGTTGGAAAGGCTATAGGCCCTAGTg.......................................................................................... 27 g 4.00 0.00 - 4.00 - - - - - - - - - - - - - - - - - - -
........................................................................................TATGAAGGGATTCCTCTCTGATACTG........................................................................................................................................ 26 1 4.00 4.00 - - - - - - 4.00 - - - - - - - - - - - - - -
...........................TAGTGGCCAAGTTTGTTCCAGAGagg..................................................................................................................................................................................................... 26 agg 3.00 0.00 - - - - - - 3.00 - - - - - - - - - - - - - -
............................................................................TGAAGCCAATCCTATGAAGGGATTCCTCT................................................................................................................................................. 29 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................TAGGCCCTAGTTGGGAAGCTACGCTGTT.......................................................................... 28 1 3.00 3.00 - 2.00 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TAAATAGACATCATGTACCCATCAAATT....................................... 28 1 3.00 3.00 - - 2.00 - 1.00 - - - - - - - - - - - - - - - -
...............................................................................................................................................................TGGGAAGCTACGCTGTTCTTTTGGTA................................................................. 26 1 3.00 3.00 - 2.00 - 1.00 - - - - - - - - - - - - - - - - -
....................................................................................................................................................TAGGCCCTAGTTGGGAAGCTACGCTGT........................................................................... 27 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TCAAATTGAAATTAATTAAGTGGGGCT................... 27 1 3.00 3.00 - 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - -
........................................TGTTCCAGAGGTAAGCAACCACTTTCT....................................................................................................................................................................................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - -
...........................TAGTGGCCAAGTTTGTTCCAGAGGTAA.................................................................................................................................................................................................... 27 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................TGGAAAGGCTATAGGCCCTAGTTGGGA...................................................................................... 27 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - -
...............................................................................................................................................................TGGGAAGCTACGCTGTTCTTTTGGTAA................................................................ 27 1 2.00 2.00 - - - - 1.00 - - 1.00 - - - - - - - - - - - - -
..............................TGGCCAAGTTTGTTCCAGAGGTAAGC.................................................................................................................................................................................................. 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGGTTGGAAAGGCTATAGGCCCTAGTT.......................................................................................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................GGCCCTAGTTGGGAAGCTACGC.............................................................................. 22 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................TGATACTGTAAATCTGGTCAAATCCCATG................................................................................................................... 29 1 2.00 2.00 - - - - - 1.00 - - - - - - 1.00 - - - - - - - -
.....................................................................................................................................TGGTTGGAAAGGCTATAGGCCCTAGTgt......................................................................................... 28 gt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGAAATTAATTAAGTGGGGCTTTTATA............. 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - -
...............................................................................................................................................................TGGGAAGCTACGCTGTTCTTTTGGTAAA............................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
........................................TGTTCCAGAGGTAAGCAACCACacc......................................................................................................................................................................................... 25 acc 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................TATGAAGGGATTCCTCTCTGATACTGT....................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TGGTAAATAGACATCATGTACCCATC............................................ 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
...........................................................................................................................................................TAGTTGGGAAGCTACGCTGTTCTTTTGG................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
...........................TAGTGGCCAAGTTTGTTCCAGAGct...................................................................................................................................................................................................... 25 ct 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...........................TAGTGGCCAAGTTTGTTCCAGAGGTc..................................................................................................................................................................................................... 26 c 1.00 8.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...........................TAGTGGCCAAGTTTGTTCCAGAagta..................................................................................................................................................................................................... 26 agta 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................TACTGTAAATCTGGTCAAATCCCATtgtt................................................................................................................ 29 tgtt 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................TACTGTAAATCTGGTCAAATCCCATGGa................................................................................................................. 28 a 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................................TTGGAAAGGCTATAGGCCCTAGTTGG........................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................TCTGATTGGATTTGAAGCCA...................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
....................................................................................................................................................................................TGGTAAATAGACATCATGTACCCA.............................................. 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................TTGTTCCAGAGGTAAGCAACCACTTT......................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TCAAATTGAAATTAATTAAGTGGGGCTT.................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................TACGCTGTTCTTTTGGTAAATAGACATC....................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................TACTGTAAATCTGGTCAAATCCCATG................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................TCCTATGAAGGGATTCCTCTCTGA............................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - -
...........................................................................................................................................................................................TAGACATCATGTACCCATCAAATTGAAAT.................................. 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
...........................TAGTGGCCAAGTTTGTTCCAGAGGTAAG................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TGGGAAGCTACGCTGTTCTTTTGctc................................................................. 26 ctc 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................TGATACTGTAAATCTGGTCAAATCCCA..................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................TGAAGCCAATCCTATGAAGGGATTCCTC.................................................................................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
........................................................................................................TCTGATACTGTAAATCTGGTCAAATCCC...................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................ATACTGTAAATCTGGTCAAATCCCATGG.................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - -
.........................................................................................................................................TGGAAAGGCTATAGGCCCTAGTTGGGAA..................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - -
....................................................................................................................................................................................TGGTAAATAGACATCATGTACCCATCA........................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................TACTGTAAATCTGGTCAAATCCaatg................................................................................................................... 26 aatg 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - -
.............................................................................................AGGGATTCCTCTCTGATACTGTAA..................................................................................................................................... 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................................................................GAAAGGCTATAGGCCCTAGTTGGGAAG.................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - -
...........................................................................TTGAAGCCAATCCTATGAAGGGtctc..................................................................................................................................................... 26 tctc 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................TCTGATACTGTAAATCTGGT.............................................................................................................................. 20 4 0.25 0.25 - - - - - - - 0.25 - - - - - - - - - - - - -
.............................................................CTTTCTGATTGGATTTGAA.......................................................................................................................................................................... 19 13 0.08 0.08 - - - - - - - - - - - - - - - - - - - 0.08 -
...............................................................TTCTGATTGGATTTGAAGC........................................................................................................................................................................ 19 15 0.07 0.07 - - - - - - - - - - - - - - - - - - - - 0.07

Antisense strand
TCCAAAAACCAAAAAAAAAAAAAAAAATAGTGGCCAAGTTTGTTCCAGAGGTAAGCAACCACTTTCTGATTGGATTTGAAGCCAATCCTATGAAGGGATTCCTCTCTGATACTGTAAATCTGGTCAAATCCCATGGTTGGAAAGGCTATAGGCCCTAGTTGGGAAGCTACGCTGTTCTTTTGGTAAATAGACATCATGTACCCATCAAATTGAAATTAATTAAGTGGGGCTTTTATAGGCCTATGTCTCT
...............................................................................((((..(((......((((((...((..(((.......))).))...))))))......)))..)))).....(((.....))).......................................................................................
.......................................................................72..........................................................................................164....................................................................................
Size Perfect hit Total Norm Perfect Norm SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037901(GSM510437)
testes_rep2. (testes)
................................GCCAAGTTTGTTCCAGAGGTAAGCAACCA............................................................................................................................................................................................. 29 1 6.00 6.00 - - - - - - - - 5.00 - - - - - - - - - 1.00 - -
...................................................................................AATCCTATGAAGGGATTCCTCTCTGATA........................................................................................................................................... 28 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................................CTACGCTGTTCTTTTGGTAAATAGACA......................................................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................ATCCTATGAAGGGATTCCTCTCTGATA........................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................................................................AGTTGGGAAGCTACGCTGTTCTTTTG.................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................GAAGGGATTCCTCTCTGATACTGTAAAT................................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................TGAAGGGATTCCTCTCTGATACTG........................................................................................................................................ 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
..............................................AGAGGTAAGCAACCACTTTCTGATTG.................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - -
.............................................................................................................................................................GGGAAGCTACGCTGTTCTTTTGGTAAAcac............................................................... 30 cac 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................GACATCATGTACCCATCAAATTGAAaa.................................... 27 aa 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - -
........................................................AACCACTTTCTGATTGGATTTGAAGCCAAT.................................................................................................................................................................... 30 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................TCCTCTCTGATACTGTAAATCTGGTCA............................................................................................................................ 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................................................................................................................GGGAAGCTACGCTGTTCTTTTGGTAAATA............................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - -
................................................................................AATCCTATGAAGGGATTCCTCTCTGAtgc............................................................................................................................................. 29 tgc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................CAGAGGTAAGCAACCACTTTCTGA..................................................................................................................................................................................... 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................TGAAGGGATTCCTCTCTGATACTGTAAA.................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................GGCCCTAGTTGGGAAGCTACGCTGTTCTT....................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TCTGGTCAAATCCCATGGTTGGAAAGGCTA...................................................................................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -