| Gene: 1700041B20Rik | ID: uc008meu.1_intron_1_0_chr2_126967951_r.3p | SPECIES: mm9 |
|
|
|
(4) OTHER.mut |
(3) PIWI.ip |
(16) TESTES |
| CAGGGTACATCCTATGGTCTCCACTTCCTTTCCCCAAGGCGGACCGTTCTTGCTAACTCCCACCCTAGCTCTATGCACTTTCTGTTCCTCCTGAGTAGTTGGCATCCAGGATTTGAGGTACCAGGGCTCTGGGGACTCTGTGCTGGAGAACAGATGTGCCCCGGAAATCACCACTGATCCCCACCCTCCTACTCCTCCAGATGCAGAGGCCTCCATGGCTGTGATAAGCCTCATGTTCTTGGCAGTGATG ....................................................................................................((.....((((...((((.....(((.((((((((((((((........))))).)).))))))).((((....)))))))...))))....)))))).................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................TTGAGGTACCAGGGCTCTGGGGACTCTGTGCTGGAGAACAGATGTGCCCCGG...................................................................................... | 52 | 1 | 29.00 | 29.00 | 29.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGTGCTGGAGAACAGATGTGCCCCG....................................................................................... | 25 | 1 | 4.00 | 4.00 | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................TAAGCCTCATGTTCTTGGCAGTGATG | 26 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .............................................................................................................................................................................................................................TGATAAGCCTCATGTTCTTGGCAGTG... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TGCTGGAGAACAGATGTGCCCCGGAA.................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TCCTCCAGATGCAGAGGCCTCCATGGC............................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................................................................................................TGTGCTGGAGAACAGATGTGCCCCGGA..................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TATGCACTTTCTGTTCCTCCTGAGTAG........................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................TGAGTAGTTGGCATCCAGGATTTGAGG.................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TTCTGTTCCTCCTGAGTAGTTGGCATC................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TGAGGTACCAGGGCTCTGGGGt................................................................................................................... | 22 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................ATCCAGGATTTGAGGct.................................................................................................................................. | 17 | ct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................TCTGTGCTGGAGAACAGATGTGCCCC........................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................TTGAGGTACCAGGGCTCTGGGGAC.................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................TCCTACTCCTCCAGATGCAGAGGCCTCC.................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................................................................................................TGTGCTGGAGAACAGATGTGCCCCGaa..................................................................................... | 27 | aa | 1.00 | 4.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................TGGCATCCAGGATTTGAGGTACCAGG............................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TGAGGTACCAGGGCTCTGGGGAgt................................................................................................................. | 24 | gt | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGTGCTGGAGAACAGATGTGCCCCGG...................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ........................................................................................TCCTGAGTAGTTGGCA.................................................................................................................................................. | 16 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |
| CAGGGTACATCCTATGGTCTCCACTTCCTTTCCCCAAGGCGGACCGTTCTTGCTAACTCCCACCCTAGCTCTATGCACTTTCTGTTCCTCCTGAGTAGTTGGCATCCAGGATTTGAGGTACCAGGGCTCTGGGGACTCTGTGCTGGAGAACAGATGTGCCCCGGAAATCACCACTGATCCCCACCCTCCTACTCCTCCAGATGCAGAGGCCTCCATGGCTGTGATAAGCCTCATGTTCTTGGCAGTGATG ....................................................................................................((.....((((...((((.....(((.((((((((((((((........))))).)).))))))).((((....)))))))...))))....)))))).................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................CCCCACCCTCCTACTCCTCCAGATGCA............................................. | 27 | 1 | 3.00 | 3.00 | - | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................CCTAGCTCTATGCAaaag............................................................................................................................................................................. | 18 | aaag | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................AGCTCTATGCACTTTCTGTTCCTCCTGAGTA......................................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TCCCCACCCTCCTACTCCTCCAGA................................................. | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................GTTCCTCCTGAGTAGTTGGCATCCA.............................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................CCACCCTCCTACTCCTCCAGATGCA............................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................ATGGCTGTGATAAGCCTCATGTTCTTGGCA...... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................TATGCACTTTCTGTTCCTCCTGAGTA......................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ATCCCCACCCTCCTACTC........................................................ | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |