| Gene: Ncaph | ID: uc008met.1_intron_13_0_chr2_126951423_r | SPECIES: mm9 |
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(2) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(1) TDRD1.ip |
(21) TESTES |
| TCATGTCAGAGATTCTGAAGCAGAAAGATGCAGAACCAACCAACTTTAAAGTAAGGAGAACGCACACTTCCTGTATAGCTCACCCAGTTCTTATCATCAGTGCTTACTGTAACACACTTGGACTCTGCACACAAGAGAGTACCACTCTCACACTTGGACTCTGCACACAAGAGCCCCGGTGAGAGAGTTCCATCCTCACACTGGAATTCTGCACACACAAGAGCCCCCGTGAGAGACTCACACAGGAATTCTGCACACACAAGAGCCCCTGGTGAGACAGTACCAGGCTTCTTTATATCCTTTCCTCAGAGGTGAACTGCAGAGAAAGAGGGACATGTTTTTATTTCCCATCATTCACTGAGTACCTTTCTGTCTCTCTCTTTTTTTAAGTATTTAATAAATCTCGCTGGATTTTACTTGTTCAAAGTGCTGTCCTGTGCATCTTCACAAATGTAATGTAGCTGTGCTTTTGACCTAGGTGGCTGCTGGCACCTTGGATGCCAGCACCAAGATCTATGCTGTCCGTGT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR051941(GSM545785) 18-32 nt total small RNAs (Mov10l-/-). (mov10L testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................TTACTGTAACACACTTGGACTCTGCACACAAGAGAGTACCACTCTCACACTT..................................................................................................................................................................................................................................................................................................................................................................................... | 52 | 1 | 35.00 | 35.00 | 35.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................GAAGCAGAAAGATGCAGAACCAACCAACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 30 | 1 | 11.00 | 11.00 | - | 5.00 | 1.00 | 2.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ................GAAGCAGAAAGATGCAGAACCAACCAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 7.00 | 7.00 | - | 1.00 | 2.00 | 3.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................GAAGCAGAAAGATGCAGAACCAACCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 5.00 | 5.00 | - | 2.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TGAAGCAGAAAGATGCAGAACCAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................GAAGCAGAAAGATGCAGAACCAACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................AGCAGAAAGATGCAGAACCAACCAACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...TGTCAGAGATTCTGAAGCAGAAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ............TTCTGAAGCAGAAAGATGCAGAACCAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............CTGAAGCAGAAAGATGCAGAACCAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........GAGATTCTGAAGCAGAAAGATGCAGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .............TCTGAAGCAGAAAGATGCAGAACCAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......AGAGATTCTGAAGCAGAAAGATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .CATGTCAGAGATTCTGAAGCAGAAAGAcg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | cg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...TGTCAGAGATTCTGAAGCAGAAAGAcgct................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 29 | cgct | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TCTGAAGCAGAAAGATGCAGAACCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................AAGCAGAAAGATGCAGAACCAACCAACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................AGAAAGATGCAGAACCAACCAACTTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................GAAGCAGAAAGATGCAGAACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TTCTGAAGCAGAAAGATGCAGAACCAACCt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | t | 1.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................AAGATGCAGAACCAACCAACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .............TCTGAAGCAGAAAGATGCAGAACCAgcca...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | gcca | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TCTGAAGCAGAAAGATGCAGAACCAACCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................AGCAGAAAGATGCAGAACCAACCAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......CAGAGATTCTGAAGCAGAAAGATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................AAGATGCAGAACCAACCAACTTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...TGTCAGAGATTCTGAAGCAGAAAGAcgc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | cgc | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................GAAGCAGAAAGATGCAGAACCAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...TGTCAGAGATTCTGAAGCAGAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .............TCTGAAGCAGAAAGATGCAGAACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TTCTGAAGCAGAAAGATGCAGAACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........AGATTCTGAAGCAGAAAGATGCAGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................GAAGCAGAAAGATGCAGAACCAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................GAAAGATGCAGAACCAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ............TTCTGAAGCAGAAAGATGCAGAACCAACCAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 33 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...TGTCAGAGATTCTGAAGCAGAAAGATGa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | a | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................TGCAGAACCAACCAACTTTAAAGTggct........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | ggct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........AGATTCTGAAGCAGAAAGATGCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........AGATTCTGAAGCAGAAAGATGCAGAACCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ............TTCTGAAGCAGAAAGATGCAGAACCAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...TGTCAGAGATTCTGAAGCAGAAAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TGAAGCAGAAAGATGCAGAACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................AAGATGCAGAACCAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| TCATGTCAGAGATTCTGAAGCAGAAAGATGCAGAACCAACCAACTTTAAAGTAAGGAGAACGCACACTTCCTGTATAGCTCACCCAGTTCTTATCATCAGTGCTTACTGTAACACACTTGGACTCTGCACACAAGAGAGTACCACTCTCACACTTGGACTCTGCACACAAGAGCCCCGGTGAGAGAGTTCCATCCTCACACTGGAATTCTGCACACACAAGAGCCCCCGTGAGAGACTCACACAGGAATTCTGCACACACAAGAGCCCCTGGTGAGACAGTACCAGGCTTCTTTATATCCTTTCCTCAGAGGTGAACTGCAGAGAAAGAGGGACATGTTTTTATTTCCCATCATTCACTGAGTACCTTTCTGTCTCTCTCTTTTTTTAAGTATTTAATAAATCTCGCTGGATTTTACTTGTTCAAAGTGCTGTCCTGTGCATCTTCACAAATGTAATGTAGCTGTGCTTTTGACCTAGGTGGCTGCTGGCACCTTGGATGCCAGCACCAAGATCTATGCTGTCCGTGT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR051941(GSM545785) 18-32 nt total small RNAs (Mov10l-/-). (mov10L testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................................................................................................................................GCAGAGAAAGAGGGACATGttgt............................................................................................................................................................................................... | 23 | ttgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |