(6)
OTHER.mut
(5)
PIWI.ip
(3)
PIWI.mut
(31)
TESTES

Sense strand
CCCTAGAGGGATGTGAAGGACTCGGGGTGAGGCCGGCCACGCCCCGCACGGTAACTCTCGGGCCTGGGTGGAGGGCGTCGCTTCAATAGTGGCCCGATTGGAGTTTTTTTGAGTTTAAACCACTTGTGTATTTGAACGGCTTGCCCAGCGTTCCGCAGAGAGAGCTTCGCACGCCTGGGCCTGGCTGGGCCTTACGCTGTGCAGCCTTTGGTCCCTTGAGCGAGTTGCGCATGTCATCTCGCACGCCTCC
................................................................................................................(((((((..((....)).))))))).....(((((((((...((..((....))..)))))).)))))......................................................................
..............................................................................................................111...................................................................181...................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
...................................................................................................................TAAACCACTTGTGTATTTGAACGGCTT............................................................................................................ 27 1 38.00 38.00 11.00 9.00 9.00 - - - 5.00 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - 1.00 - - -
...................................................................................................................TAAACCACTTGTGTATTTGAACGGCT............................................................................................................. 26 1 9.00 9.00 3.00 3.00 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................TACGCTGTGCAGCCTTTGGTCCCTTGA............................... 27 1 7.00 7.00 2.00 1.00 1.00 - - - - - - 1.00 - - - - - 1.00 - - - - - - - 1.00 - - - - - - -
...TAGAGGGATGTGAAGGACTCGGGGT.............................................................................................................................................................................................................................. 25 1 4.00 4.00 - - - - 1.00 1.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
...TAGAGGGATGTGAAGGACTCGGG................................................................................................................................................................................................................................ 23 1 4.00 4.00 - - - - - 2.00 - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
...TAGAGGGATGTGAAGGACTCGGGG............................................................................................................................................................................................................................... 24 1 3.00 3.00 - - - - - - - 1.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
......................................................................................TAGTGGCCCGATTGGAGTTTTTTTGA.......................................................................................................................................... 26 1 3.00 3.00 1.00 - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..........................................................CGGGCCTGGGTGGAGccgc............................................................................................................................................................................. 19 ccgc 3.00 0.00 - - - - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................TTAAACCACTTGTGTATTTGAACGGCT............................................................................................................. 27 1 3.00 3.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...........TGTGAAGGACTCGGGGTGAGGCCGGC..................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................GAGAGAGCTTCGCACGCCTG......................................................................... 20 1 2.00 2.00 - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TGTGCAGCCTTTGGTCCCTTGAGCGAG.......................... 27 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................TCCGCAGAGAGAGCTTCGCACGCCTG......................................................................... 26 1 2.00 2.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...TAGAGGGATGTGAAGGACTCGGGGTG............................................................................................................................................................................................................................. 26 1 2.00 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - 1.00 - - - - - -
...............AAGGACTCGGGGTGAGGC......................................................................................................................................................................................................................... 18 1 2.00 2.00 - - - - - - - - - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - -
................................................................................................................................................................................................TACGCTGTGCAGCCTTTGGTCCCTTGAG.............................. 28 1 2.00 2.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
......................................................................................................................ACCACTTGTGTATTTGAACGGCTTGC.......................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................TAACTCTCGGGCCTGGGTGGAGGGCGT............................................................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................CCGCAGAGAGAGCTTCGCACGCCTGGGC...................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................GAGAGAGCTTCGCACGCCTGGGCCTG................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
..CTAGAGGGATGTGAAGGACTCGGGG............................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...........................................................................................................................TTGTGTATTTGAACGGCTTGCCCAGC..................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................CTCGGGCCTGGGTGGAGGGCGTCG.......................................................................................................................................................................... 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...TAGAGGGATGTGAAGGAC..................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...TAGAGGGATGTGAAGGACTCGGGaa.............................................................................................................................................................................................................................. 25 aa 1.00 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
..CTAGAGGGATGTGAAGGACT.................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
................AGGACTCGGGGTGAGGCC........................................................................................................................................................................................................................ 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...........................TGAGGCCGGCCACctg............................................................................................................................................................................................................... 16 ctg 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...TAGAGGGATGTGAAGGACT.................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
....................................................AACTCTCGGGCCTGGGTGGAGGG............................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TTGCCCAGCGTTCCGCAGAGAGAGCTTC.................................................................................. 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................TAACTCTCGGGCCTGGGTGGAGGGCG............................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................TTGTGTATTTGAACGGCTTGCCCAGCG.................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TAAACCACTTGTGTATTTGAACGGCTTtcc......................................................................................................... 30 tcc 1.00 38.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................TCCGCAGAGAGAGCTTCGCACGact.......................................................................... 25 act 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
................................................................................................................................................................................................TACGCTGTGCAGCCTTTGGTCCCTTG................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................TTCCGCAGAGAGAGCTTCGCACGCCT.......................................................................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................CTTGTGTATTTGAACagta............................................................................................................. 19 agta 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.........................................................................................................................................................................................................CAGCCTTTGGTCCCTTGAGCGAGTTGC...................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..................................................................................................................TTAAACCACTTGTGTATTTGAACGGC.............................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................TAGTGGCCCGATTGGAGTTTTTTTGAGT........................................................................................................................................ 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................GCCTTTGGTCCCTTGAGCGAGT......................... 22 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................AACTCTCGGGCCTGGGTGGAGGGCGT............................................................................................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................TTAAACCACTTGTGTATTTGAACGGCTT............................................................................................................ 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................CTCGGGGTGAGGCCGGCCACGCC............................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................................AACCACTTGTGTATTTGAACGGCTTGC.......................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................TTTGAACGGCTTGCCCAGCGTTCCGCA............................................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTAACTCTCGGGCCTGGGTGGAGGG............................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...TAGAGGGATGTGAAGGACTCGGGt............................................................................................................................................................................................................................... 24 t 1.00 4.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...TAGAGGGATGTGAAGGACTCGGGGTt............................................................................................................................................................................................................................. 26 t 1.00 4.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................TAAACCACTTGTGTATTTGAACGGCTTG........................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.CCTAGAGGGATGTGAAGGACTCGGGGTGA............................................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TTGGTCCCTTGAGCGAGTTGCGCA................... 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TTGGTCCCTTGAGCGAGTTGCGCATG................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TGCCCAGCGTTCCGCAGAGAGAGCTTCGCACGC............................................................................ 33 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...TAGAGGGATGTGAAGGACTCGGGGTa............................................................................................................................................................................................................................. 26 a 1.00 4.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....GAGGGATGTGAAGGACTC................................................................................................................................................................................................................................... 18 2 0.50 0.50 - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - -
......AGGGATGTGAAGGACTCGGGG............................................................................................................................................................................................................................... 21 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................ACTTGTGTATTTGAAC................................................................................................................. 16 6 0.17 0.17 - - - - - - - - - - - - - - - - - - 0.17 - - - - - - - - - - - -

Antisense strand
CCCTAGAGGGATGTGAAGGACTCGGGGTGAGGCCGGCCACGCCCCGCACGGTAACTCTCGGGCCTGGGTGGAGGGCGTCGCTTCAATAGTGGCCCGATTGGAGTTTTTTTGAGTTTAAACCACTTGTGTATTTGAACGGCTTGCCCAGCGTTCCGCAGAGAGAGCTTCGCACGCCTGGGCCTGGCTGGGCCTTACGCTGTGCAGCCTTTGGTCCCTTGAGCGAGTTGCGCATGTCATCTCGCACGCCTCC
................................................................................................................(((((((..((....)).))))))).....(((((((((...((..((....))..)))))).)))))......................................................................
..............................................................................................................111...................................................................181...................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
..........................................................................................................................................GCTTGCCCAGCGTTCCGCAGAGAGA....................................................................................... 25 1 6.00 6.00 - - - 4.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................GGCTTGCCCAGCGTTCCGCAGAGAGA....................................................................................... 26 1 5.00 5.00 - - - 2.00 - - - - - - - - - - - - 3.00 - - - - - - - - - - - - - -
.......................................................................................................................................ACGGCTTGCCCAGCGTTCCGCAGAGA......................................................................................... 26 1 4.00 4.00 - - - - - - - - - - - - - 4.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................TCCCTTGAGCGAGTTGCGCATGTCA.............. 25 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................GGTCCCTTGAGCGAGTTGCGCATGTCA.............. 27 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
.............................CCGGCCACGCCCCGCggc........................................................................................................................................................................................................... 18 ggc 2.00 0.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TTACGCTGTGCAGCCTTTGGTCCCTT................................. 26 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
........................................................................................................................................CGGCTTGCCCAGCGTTCCG............................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.............GGACTCGGGGTGAGggcg........................................................................................................................................................................................................................... 18 ggcg 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................GGCCACGCCCCGCACGGTAACTCTC............................................................................................................................................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................TCCCTTGAGCGAGTTGCGCATGTCAT............. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................CGGCTTGCCCAGCGTTCCGCAGAGA......................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................GTTCCGCAGAGAGAGCTTCGCAC.............................................................................. 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.....................................................................................................................AACCACTTGTGTATTTGAACGGCTTGCCCA....................................................................................................... 30 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................CCGGCCACGCCCCGgcgg............................................................................................................................................................................................................ 18 gcgg 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................GCCTTTGGTCCCTTGAGCGAGTTGCGCA................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TTACGCTGTGCAGCCTTTGGTCCCT.................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
............................................................................................................................................................................GCCTGGGCCTGGCTGGGCCTTACGCTG................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................GTCCCTTGAGCGAGTTGCGCATGTCA.............. 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -