chr2:119635904 119636263 +
(4)
OTHER.mut 		(5)
PIWI.ip 		(2)
PIWI.mut 		(24)
TESTES

Sense strand
GGCAGCCCGATCTTTCAATCGAGAAAGGCCTGAACGCATTGAGGCCACATGTGAGTGCTGGAGCATCACAGAAGGGAAGAGACAGACTATCTTGTGTTCCTACCTCTTACCAACTCCTTTATCCAGCTAAAGAGCCTGAACCTTTCTAAGTCCCAGCATAGTGAAAAGGGACACCCTAACTTGCTTGGGAGAGCTTATCACCACAGTGTGGGAGATCCAGGCTCTGCTGAGGGCAGAAAGCCGGGTGGAGCTGTAGGCTGGAGTGTGGATTTGACTGCAGCCTCGCTTCCCTTTCACCTCCTCCCTGCAGTGGATAGCCTGGGCATCAGCGATGAATTGAAGGAAAAGCTGGAGGATGTC


 Size Perfect hit Total Norm Perfect Norm SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		mjTestesWT2()
Testes Data. (testes) 		mjTestesWT3()
Testes Data. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
............................................................................................................................................................................................................................................................................................................................................TGAATTGAAGGAAAAGCTGGAGGATG.. 26 1 8.00 8.00 - 1.00 4.00 - - - - 2.00 - - - - - - 1.00 - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................TGAATTGAAGGAAAAGCTGGAGGATGT. 27 1 7.00 7.00 - 1.00 1.00 - - - 1.00 - - - - - - - - 1.00 1.00 - 1.00 1.00 - - - -
.............................................................................................................................................................................................................................................................TAGGCTGGAGTGTGGATTTGA...................................................................................... 21 1 3.00 3.00 2.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
................................................................................................................................................................................................................TGGGAGATCCAGGCTCTGCTGA.................................................................................................................................. 22 1 2.00 2.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGTAGGCTGGAGTGTGGATTTGA...................................................................................... 23 1 2.00 2.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................................................................................................................................................................................................GTGGAGCTGTAGGCTGGAGTGTGGA........................................................................................... 25 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - -
...............CAATCGAGAAAGGCCTGAACGCATTGAG............................................................................................................................................................................................................................................................................................................................. 28 1 2.00 2.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................AGCCGGGTGGAGCTGTAGGC...................................................................................................... 20 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - -
.............TTCAATCGAGAAAGGCCTGAACGCATT................................................................................................................................................................................................................................................................................................................................ 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - -
.....................AGAAAGGCCTGAACGCATTGAGGCCA......................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................TGAATTGAAGGAAAAGCTGGAGGATGTC 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................TGGAGCATCACAGAAGGGAAGAGACA.................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................TAGGCTGGAGTGTGGATTTGACTGa.................................................................................. 25 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................AAGGAAAAGCTGGAGGATGTC 21 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................TGGATAGCCTGGGCATCAG............................... 19 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................GAATTGAAGGAAAAGCTGGAGGATGTC 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............CAATCGAGAAAGGCCTGAACGa................................................................................................................................................................................................................................................................................................................................... 22 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................AAAGAGCCTGAACCTTTCTAAGTCCC.............................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - -
................AATCGAGAAAGGCCTGAACGC................................................................................................................................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...........................GCCTGAACGCATTGAGGCCACATGTGAGTGCT............................................................................................................................................................................................................................................................................................................. 32 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................CGAGAAAGGCCTGAACGCATTGAGGC........................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................AGCCGGGTGGAGCTGTAGGCTag................................................................................................... 23 ag 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - -
........................................................GCTGGAGCATCACAGAAG.............................................................................................................................................................................................................................................................................................. 18 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................TGGGCATCAGCGATGAATTGAAGGA................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..................TCGAGAAAGGCCTGAAC..................................................................................................................................................................................................................................................................................................................................... 17 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................TAGGCTGGAGTGTGGATTTGAg..................................................................................... 22 g 1.00 3.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................TCAGCGATGAATTGAAGGAAAAGCTGGA....... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................AATCGAGAAAGGCCTGAACGCATT................................................................................................................................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................GATGAATTGAAGGAAAAGCTGGAGGATG.. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............CAATCGAGAAAGGCCTGAACGCATTGAGG............................................................................................................................................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..............................................................................................................................................................................................................................................................................................................................................AATTGAAGGAAAAGCTGGAGGATGT. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............TTTCAATCGAGAAAGGCCTGAACGCATT................................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................GCATCACAGAAGGGAAGAGACAGACTA............................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................ACAGACTATCTTGTGTTCCTACCTCTTA........................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................AGCCTGGGCATCAGCGATGAATTGAAGG................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................GAAAGGCCTGAACGCAT................................................................................................................................................................................................................................................................................................................................. 17 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............CAATCGAGAAAGGCCTGAACGCATT................................................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................GGGTGGAGCTGTAGGCTGGAGT................................................................................................ 22 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..............................................................................................................................................................................................................................................AGCCGGGTGGAGCTGTAGGCTGG................................................................................................... 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................CGGGTGGAGCTGTAGGCTGGAGTG............................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................GAAAGGCCTGAACGCATTGA.............................................................................................................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................GAAAGGCCTGAACGC................................................................................................................................................................................................................................................................................................................................... 15 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................CGATGAATTGAAGGAAAAGCTGGAGG..... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................GAGAAAGGCCTGAACGCATTGAGGC........................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................CAGCGATGAATTGAAGGAAAAGCT.......... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00
.............................................................................................................................................................................................................................................................................................CTTCCCTTTCACCTCCTCCCTGC.................................................... 23 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.....................AGAAAGGCCTGAACGCATTGAGG............................................................................................................................................................................................................................................................................................................................ 23 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................TGGATAGCCTGGGCATCAGCGATGAA........................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................CAGAAAGCCGGGTGGAGCTGTAGGCTGG................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
....................GAGAAAGGCCTGAAC..................................................................................................................................................................................................................................................................................................................................... 15 8 0.50 0.50 0.12 - - - - - 0.12 - - 0.12 - - - - 0.12 - - - - - - - - -

Antisense strand
GGCAGCCCGATCTTTCAATCGAGAAAGGCCTGAACGCATTGAGGCCACATGTGAGTGCTGGAGCATCACAGAAGGGAAGAGACAGACTATCTTGTGTTCCTACCTCTTACCAACTCCTTTATCCAGCTAAAGAGCCTGAACCTTTCTAAGTCCCAGCATAGTGAAAAGGGACACCCTAACTTGCTTGGGAGAGCTTATCACCACAGTGTGGGAGATCCAGGCTCTGCTGAGGGCAGAAAGCCGGGTGGAGCTGTAGGCTGGAGTGTGGATTTGACTGCAGCCTCGCTTCCCTTTCACCTCCTCCCTGCAGTGGATAGCCTGGGCATCAGCGATGAATTGAAGGAAAAGCTGGAGGATGTC


 Size Perfect hit Total Norm Perfect Norm SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		mjTestesWT2()
Testes Data. (testes) 		mjTestesWT3()
Testes Data. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)