(3)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(25)
TESTES

Sense strand
TACACCTTATGTGGCCAAGATCTCTGCCCTCTGGGAGAACCCTGAGTCAGGTACCTGTTCCTCAGACTGGGAACTAAAGGAACAGCTGCCCTCAGTTGGCCCCTGCCTAGAGTTTTGCCTGGCACAAGACCACCATTCTTGGCAGAGCCTGCCCACCCTTCATCCGGGGTCTGTCTCCTGTGGAGGCTGTAGCAACCTTGTGACTTGAGGTTGAATCTGTGTACTCACTCTGTTAGCCACCAGAGCCTGAGCACTTGCCCCATACCTCATCTGCCAGAGCCTTCTTCCCATCTCCCTATGTCCAACAGCATTCCAGGCTGCTGAATGCTTGGCCGTGGTCAGAGGACACAGGTGGCCAGAGCCTGCAGGATTGGGCCAGTAGCAGGGGTTGGACAGACCTCTAGGGCAGGTGGCCAGCTCTAGCCATGACCTCTTCTCTTGTCCCCTAGGAGAGCTGATGATGAGCCTCCTGTGGTATTACAGGCCTGAGCACTTACAG


Size Perfect hit Total Norm Perfect Norm SRR014236(GSM319960)
10 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesWT1()
Testes Data. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
mjTestesWT2()
Testes Data. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
................................GGGAGAACCCTGAGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 18 1 2.00 2.00 - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
......................................................................................................................................................................................................TGTGACTTGAGGTTGAATCTGTGTAC................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - -
.............................TCTGGGAGAACCCTGAGTCAGGagag............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 26 agag 2.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 -
........................................................................................................................................................................................................TGACTTGAGGTTGAATCTGTGTACTCACTC............................................................................................................................................................................................................................................................................. 30 1 2.00 2.00 - - - - 1.00 - - - - - - - - - - - - - - 1.00 - - - - - -
...........TGGCCAAGATCTCTGCCCTCTGGGAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 28 1 2.00 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - 1.00
............................CTCTGGGAGAACCCTGAGTCAGGagag............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 agag 2.00 0.00 - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
..............................................................CAGACTGGGAACTAAAGGAACAGCTGt.......................................................................................................................................................................................................................................................................................................................................................................................................................... 27 t 2.00 0.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
...............................TGGGAGAACCCTGAGTCAGGag.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 22 ag 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................TGTTAGCCACCAGAGCCTGAGCA...................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...ACCTTATGTGGCCAAGATCTCTGCCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................TGGGAGAACCCTGAGTCAGGaga............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 23 aga 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
..........................................................................................................................................................................................................................................................................TCATCTGCCAGAGCCTTCTTCCCATCTC............................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......TTATGTGGCCAAGATCTCTGCCCTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TCATCCGGGGTCTGTCTCCTGTGGtgg......................................................................................................................................................................................................................................................................................................................... 27 tgg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TGCCTAGAGTTTTGCCTGGCACAAGACC................................................................................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........TGTGGCCAAGATCTCTGCCCTCTGGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......TATGTGGCCAAGATCTCTGCCCTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........TGTGGCCAAGATCTCTGCCCTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................AGATCTCTGCCCTCTGGGAGAACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TGACTTGAGGTTGAATCTGTGTACTCACT.............................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........TGGCCAAGATCTCTGCCCTCTGGGAGAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 30 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......TTATGTGGCCAAGATCTCTGCCCTCTt.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................TCTGGGAGAACCCTGAGTCAGGaga............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 25 aga 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........TGGCCAAGATCTCTGCCCTCTGGGAGAcccc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 31 cccc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................GGCTGTAGCAACCTTGTGACTTGAGGTT............................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................TGGGAACTAAAGGAACAGCTGCCCTCAGT................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................TGAGCACTTGCCCCATACCTCATCTGC................................................................................................................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................TTAGCCACCAGAGCCTGAGCACTTGCCC............................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.ACACCTTATGTGGCCAAGATCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.........................................................................................................................................................................................................................................TAGCCACCAGAGCCTaagg....................................................................................................................................................................................................................................................... 19 aagg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...............................................................................................................................................................TCATCCGGGGTCTGTCTCCTGTGGAGGC........................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................TTCCCATCTCCCTATGTCCAACAGCAT............................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATTACAGGCCTGAGCACTTACAGa 28 a 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCCAGTAGCAGGGGTTGGACA........................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.........TGTGGCCAAGATCTCTGCCCTCTGGGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTACAGGCCTGAGCACTTACAG 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TGACTTGAGGTTGAATCTGTGTACTC................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATTACAGGCCTGAGCACTTACA. 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......TATGTGGCCAAGATCTCTGCCCTCTGGGAa.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 30 a 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGAGCCTCCTGTGGTATTACAGG............... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCCTGTGGTATTACAGGCCTGAGC........ 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................ACTCACTCTGTTAGCCACCAGAGCCT........................................................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................TGTGACTTGAGGTTGAATCTGTGTA.................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................TCTGCCCTCTGGGAGAACCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 21 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........TGGCCAAGATCTCTGCCCTCTGGGAGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...........................................................CCTCAGACTGGGAACTAAAGGAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGATGATGAGCCTCCTGTGGTAT..................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................GAGAACCCTGAGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 16 3 1.00 1.00 - - - - 0.33 - - 0.33 - - - - - 0.33 - - - - - - - - - - - -
......................................................................................................................................................................................................TGTGACTTGAGGTTGAATCTGTGTACTC................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.....................CTCTGCCCTCTGGGAGAACCtt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 22 tt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................GTGACTTGAGGTTGAATCTGTGTA.................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGAGCCTCCTGTGGTATTACAGGC.............. 30 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.................................GGAGAACCCTGAGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 17 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
TACACCTTATGTGGCCAAGATCTCTGCCCTCTGGGAGAACCCTGAGTCAGGTACCTGTTCCTCAGACTGGGAACTAAAGGAACAGCTGCCCTCAGTTGGCCCCTGCCTAGAGTTTTGCCTGGCACAAGACCACCATTCTTGGCAGAGCCTGCCCACCCTTCATCCGGGGTCTGTCTCCTGTGGAGGCTGTAGCAACCTTGTGACTTGAGGTTGAATCTGTGTACTCACTCTGTTAGCCACCAGAGCCTGAGCACTTGCCCCATACCTCATCTGCCAGAGCCTTCTTCCCATCTCCCTATGTCCAACAGCATTCCAGGCTGCTGAATGCTTGGCCGTGGTCAGAGGACACAGGTGGCCAGAGCCTGCAGGATTGGGCCAGTAGCAGGGGTTGGACAGACCTCTAGGGCAGGTGGCCAGCTCTAGCCATGACCTCTTCTCTTGTCCCCTAGGAGAGCTGATGATGAGCCTCCTGTGGTATTACAGGCCTGAGCACTTACAG


Size Perfect hit Total Norm Perfect Norm SRR014236(GSM319960)
10 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesWT1()
Testes Data. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
mjTestesWT2()
Testes Data. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
..............................................................................................................................................................................................................................................................................CTGCCAGAGCCTTCTTC.................................................................................................................................................................................................................... 17 5 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..........................................................................................................................................................................................................................................................................ATCTGCCAGAGCCTTtc........................................................................................................................................................................................................................ 17 tc 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -