| Gene: Nat10 | ID: uc008liy.1_intron_4_0_chr2_103566397_r | SPECIES: mm9 |
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(7) OTHER.mut |
(3) PIWI.ip |
(2) PIWI.mut |
(21) TESTES |
| TGTACTTCCTGAACCAGCTAGGAGACCTGTCCCTGTCGGCTGCCCAGTCGGTAGGTCACCTGGGACTCCATGGGGGACAAGGGAGGACAGTGGAGCTGTTGGTGCTGGGCCCTTAGATGAGTCCTTGGAAGTAGCTTTGTGCCTTTAGCCCTGGCAGAGCTAATGGTGGCCCATCCTCACTCTGCAGGCCGAGGCGAGCAATGTGGCTGTATTGTTAGCAAGCAGACTGCTACACTTTGAACCCACACTCTCCCTGCCACCTTGTCACCCTACCAGAAGGCCAGGCTATCCTGCACTCCGGATATATGTGGTTTTTTTGTGAAGTTGATGTTTTTTGGGACAATGTGAACTAAAGTGCATTTTAGGAAGGAAGGAGTGTTCCTGCCTTAGTTGCAGGATGGAAGATGCCAAACCCCCACTGCTGCTCTCTGGTTTCTGCTTCATCAAATGAGGCAGCTCCATTCTAGGCTATTGTAATGCGCAAGGCTATCTTGGAAGCCAGTCCAGCTGATTCTCCTTCCTTCAGGCTCTTCTCTTGGGAATTGGCCTACAGCACAAGTCTGTGGATCAGCTGGA ............................................................................................................................................................................................................................................................................................................................................................................................................................................(((((..(((((((((...))))))))).((((.....((((.((((.....))))))))....)))).))))).....((((...........)))).................................................. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................427................................................................................................526................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................AGAGCTAATGGTGGCCCATCCTCACTCTGCAGGCCGAGGCGAGCAATGTGGC................................................................................................................................................................................................................................................................................................................................................................................. | 52 | 1 | 47.00 | 47.00 | 47.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TGGCTGTATTGTTAGCtggt................................................................................................................................................................................................................................................................................................................................................................. | 20 | tggt | 14.00 | 0.00 | - | 4.00 | 3.00 | 3.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..TACTTCCTGAACCAGCTAGGAGACCTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........TGAACCAGCTAGGAGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................TAGTTGCAGGATGGAAGATGCCAAACC.................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TGTTGGTGCTGGGCCCTTAGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ..TACTTCCTGAACCAGCTAGGAGACCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TGGCTGTATTGTTAGCtgtt................................................................................................................................................................................................................................................................................................................................................................. | 20 | tgtt | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................AGTCGGTAGGTCAatag.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | atag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCACAAGTCTGTGGATCAGCTG.. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..TACTTCCTGAACCAGCTAGGAGACCTGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAAGTCTGTGGgat....... | 18 | gat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCACAAGTCTGTGGATCAGCTGG. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................GTCGGCTGCCCAGTCGGct........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | ct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAAGTCTGTGGggt....... | 18 | ggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GAACCAGCTAGGAGACCTGTCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACAAGTCTGTGGgt........ | 18 | gt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTAATGCGCAAGGCTATCTTGGA................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TCCTGAACCAGCTAGGAGACCTGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TGGCTGTATTGTTAGCtgg.................................................................................................................................................................................................................................................................................................................................................................. | 19 | tgg | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...ACTTCCTGAACCAGCTAGGAGACCTGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........TGAACCAGCTAGGAGACCTGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCACAAGTCTGTGGATCAGCTGGA | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCACAAGTCTGTGGATCAGCTGGA | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCTGTGGATCAGtc... | 17 | tc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................GGAGTGTTCCTGCCctgt.......................................................................................................................................................................................... | 18 | ctgt | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................TTTTTTGGGACAATGTGAACTAAAGTGC.......................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| TGTACTTCCTGAACCAGCTAGGAGACCTGTCCCTGTCGGCTGCCCAGTCGGTAGGTCACCTGGGACTCCATGGGGGACAAGGGAGGACAGTGGAGCTGTTGGTGCTGGGCCCTTAGATGAGTCCTTGGAAGTAGCTTTGTGCCTTTAGCCCTGGCAGAGCTAATGGTGGCCCATCCTCACTCTGCAGGCCGAGGCGAGCAATGTGGCTGTATTGTTAGCAAGCAGACTGCTACACTTTGAACCCACACTCTCCCTGCCACCTTGTCACCCTACCAGAAGGCCAGGCTATCCTGCACTCCGGATATATGTGGTTTTTTTGTGAAGTTGATGTTTTTTGGGACAATGTGAACTAAAGTGCATTTTAGGAAGGAAGGAGTGTTCCTGCCTTAGTTGCAGGATGGAAGATGCCAAACCCCCACTGCTGCTCTCTGGTTTCTGCTTCATCAAATGAGGCAGCTCCATTCTAGGCTATTGTAATGCGCAAGGCTATCTTGGAAGCCAGTCCAGCTGATTCTCCTTCCTTCAGGCTCTTCTCTTGGGAATTGGCCTACAGCACAAGTCTGTGGATCAGCTGGA ............................................................................................................................................................................................................................................................................................................................................................................................................................................(((((..(((((((((...))))))))).((((.....((((.((((.....))))))))....)))).))))).....((((...........)))).................................................. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................427................................................................................................526................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................GCAGGCCGAGGCGAGgcc.......................................................................................................................................................................................................................................................................................................................................................................................... | 18 | gcc | 8.00 | 0.00 | - | 3.00 | - | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGCTATCTTGGcatt................................................................................. | 19 | catt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |