| Gene: Atf2 | ID: uc008kde.1_intron_10_0_chr2_73701296_r.3p | SPECIES: mm9 |
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(2) OTHER.mut |
(1) OVARY |
(1) PIWI.ip |
(1) TDRD1.ip |
(15) TESTES |
| GCAATTCTTTCTTGTGGGAAAAATATTCTGCACTCTACCCCATCCATAGTTCACAGTAAGTTCACAGCTTTCTTACATGGGCTCCCACAGAAAACAGAAGTGTTTGGTGGAAATTGGATCTTAGGATTTATATTTGAAATTGTTCTACATTCAGAAACATACCACAGAACACCTCATTCTTGATTTGTGCTTTGTTACAGATAAAACACGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGCA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT4() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037900(GSM510436) testes_rep1. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................ACAGAAGTGTTTGGTGGAAATTGGATCTTAGGATTTATATTTGAAATTGTTC......................................................................................................... | 52 | 1 | 30.00 | 30.00 | 30.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................ACGGACCTGTGGAATATGAGTGATGAC................ | 27 | 1 | 4.00 | 4.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................ATGAGTGATGACAAgata.......... | 18 | gata | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - |
| .......................................................................................................................................................................................................GATAAAACACGGACCTGTGGAATAT.......................... | 25 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................AACACGGACCTGTGGAATATGAGTGATG.................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................CGGACCTGTGGAATATGAGT...................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......................................................................................................................................................................................................................GTGGAATATGAGTGATGACAAACCCTTTC...... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................ACGGACCTGTGGAATATGAGTGATGACA............... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................................................................................................................................................................................................................TGGAATATGAGTGATGACAAACCt.......... | 24 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TGTGGAATATGAGTGATGACAAA............. | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................ATGAGTGATGACAAgggg.......... | 18 | gggg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................TTGGTGGAAATTGGtagt................................................................................................................................. | 18 | tagt | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................CCTGTGGAATATGAGTGATGACA............... | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................ACCTGTGGAATATGAGTGATGAC................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..............................................................................................................................................................................................................................ATGAGTGATGACAAgttc.......... | 18 | gttc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................TGGAATATGAGTGATGACAAACCCTTTC...... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................GTGGAATATGAGTGATGACA............... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................TGGAATATGAGTGATGACAAACCCT......... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................ATGAGTGATGACAAgaaa.......... | 18 | gaaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| GCAATTCTTTCTTGTGGGAAAAATATTCTGCACTCTACCCCATCCATAGTTCACAGTAAGTTCACAGCTTTCTTACATGGGCTCCCACAGAAAACAGAAGTGTTTGGTGGAAATTGGATCTTAGGATTTATATTTGAAATTGTTCTACATTCAGAAACATACCACAGAACACCTCATTCTTGATTTGTGCTTTGTTACAGATAAAACACGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGCA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT4() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037900(GSM510436) testes_rep1. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................ATTTGTGCTTTGTTAaaga..................................................... | 19 | aaga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |