| Gene: Rbm18 | ID: uc008jlh.1_intron_3_0_chr2_35982772_r.3p | SPECIES: mm9 |
|
|
(4) OTHER.mut |
(3) PIWI.ip |
(1) PIWI.mut |
(15) TESTES |
| AGGCATGACCATTCTTGTTCCCATTCCAAATAGAGGCAAACAGTCCTGTTTCCCAAATAAACTAACCGCAGTTTATAGGCAAGCTTAGGGCATTGGCCAGGGGACTTTTTCGCCTGGGGTAAATTACCTCCCTCTTTTATCTTACATTTGAGGCTGAGCAGCCAGCAGTGAGTGAACTCATGGCTCTTCTGTCTCCACAGATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTGAAGCAGTTTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................TTTGAGGCTGAGCAGCCAGCAG.................................................................................. | 22 | 1 | 14.00 | 14.00 | 7.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................CCAGAAGTTTGGCAAGGTGAAGCAGTT.. | 27 | 1 | 4.00 | 4.00 | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - |
| ...................................................................................................................................................TTGAGGCTGAGCAGCCAGCAGT................................................................................. | 22 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................ATTTGAGGCTGAGCAGCCAGCAGa................................................................................. | 24 | a | 3.00 | 1.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................CCAGAAGTTTGGCAAGGTGAAGCAGTTT. | 28 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................TTGAGGCTGAGCAGCCAGCAG.................................................................................. | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - |
| ..................................................................................................................................................TTTGAGGCTGAGCAGCCAGCAGT................................................................................. | 23 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................AGAAGTTTGGCAAGGTGAAGCAGTTT. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 |
| ........................................................................................................................................................................................................................................GCAAGGTGAAGCAGTTTGaca | 21 | aca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .................................................................................................................................................ATTTGAGGCTGAGCAGCCAGCAG.................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..................................................................................................................................................TTTGAGGCTGAGCAGCCAGCAGTat............................................................................... | 25 | at | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ............................................................................................................................................................................................................................TCCAGAAGTTTGGCAAGGTGAAGCAGT... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................AGAAGTTTGGCAAGGTGAAGCAGTTTG | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TTTGAGGCTGAGCAGCCAGCAGaa................................................................................ | 24 | aa | 1.00 | 14.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................CCAGAAGTTTGGCAAGGTGAAGCAGT... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| AGGCATGACCATTCTTGTTCCCATTCCAAATAGAGGCAAACAGTCCTGTTTCCCAAATAAACTAACCGCAGTTTATAGGCAAGCTTAGGGCATTGGCCAGGGGACTTTTTCGCCTGGGGTAAATTACCTCCCTCTTTTATCTTACATTTGAGGCTGAGCAGCCAGCAGTGAGTGAACTCATGGCTCTTCTGTCTCCACAGATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTGAAGCAGTTTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................GCATTGGCCAGGGGAacca.................................................................................................................................................. | 19 | acca | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |