(3)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(23)
TESTES

Sense strand
CCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAAGTGGGTGACTTGACTGAGAAACTCTCTTCTGGGGTGAAGGAAGGCTGGGCCCTTCCCCATCCTCATTTGGAAACTCTTGATGCTCTTGGCAGACACACTCTCCTAAGGCTGGTGTGAGCGTGGGAATGCAGAGGCGACAGGCTGCAGTTTGTATGCCGCCTGCAAGGGACCTGGGCTCAGTAGCTAGTGAAGAACTGTGC
.................................................................................................................((((.((.....)).))))((((..(((..(((.(((.((.......))...))).)))....)))))))...................................................................
................................................................................................................113...................................................................183.................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
.....................................................................................................................TGGAAACTCTTGATGCTCTTGGCAGA........................................................................................................... 26 1 32.00 32.00 6.00 2.00 9.00 - 3.00 - 5.00 1.00 1.00 - - 4.00 - 1.00 - - - - - - - - -
.....................................................................................................................TGGAAACTCTTGATGCTCTTGGCAGAC.......................................................................................................... 27 1 31.00 31.00 11.00 2.00 9.00 1.00 4.00 - 4.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................................TAAGGCTGGTGTGAGCGTGGGAATGC....................................................................... 26 1 12.00 12.00 - 2.00 - 4.00 - - - 2.00 1.00 1.00 - - 1.00 - - - - - - - - - 1.00
......................................................................................................................................................................................................TTGTATGCCGCCTGCAAGGGACCTG........................... 25 1 6.00 6.00 - - - - - - - - - 1.00 3.00 - 1.00 - - - - - - - 1.00 - -
..................................................................................................................................................................................................................TGCAAGGGACCTGGGCTCAGTAGCTA.............. 26 1 5.00 5.00 1.00 - - - - - - 2.00 - 1.00 - - - 1.00 - - - - - - - - -
....................................................................................................................TTGGAAACTCTTGATGCTCTTGGCAGAC.......................................................................................................... 28 1 4.00 4.00 1.00 - 2.00 - 1.00 - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGGCAGACACACTCTCCTAAGGCTGGT....................................................................................... 27 1 3.00 3.00 1.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................TCCTAAGGCTGGTGTGAGCGTGGG............................................................................ 24 1 3.00 3.00 - 2.00 - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................TCATTTGGAAACTCTTGATGCTCTTGGC.............................................................................................................. 28 1 3.00 3.00 - 1.00 - - 1.00 - - - - - - - - - - - 1.00 - - - - - -
................................................................TGAGAAACTCTCTTCTGGGGTGAAGGA............................................................................................................................................................... 27 1 3.00 3.00 - - - - - 3.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................TGATGCTCTTGGCAGACACACTCTC.................................................................................................. 25 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................TGGAAACTCTTGATGCTCTTGGCAGACAC........................................................................................................ 29 1 2.00 2.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TGGTGTGAGCGTGGGAATGCAGAGG.................................................................. 25 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGTGAGCGTGGGAATGCAGAGGCGA............................................................... 25 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TGGTGTGAGCGTGGGAATGCAGAGa.................................................................. 25 a 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - -
.........................................................................................................................................................TAAGGCTGGTGTGAGCGTGGGAATG........................................................................ 25 1 2.00 2.00 - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - -
............................................................TGACTGAGAAACTCTCTTCTGGGGTGA................................................................................................................................................................... 27 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................TGATGCTCTTGGCAGACACACTCTCC................................................................................................. 26 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TGGTGTGAGCGTGGGAATGCAGAG................................................................... 24 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGCAAGGGACCTGGGCTCAGTAGCTAGT............ 28 1 2.00 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - -
....................................................................................................................................................................TGAGCGTGGGAATGCAGAGGCGACAG............................................................ 26 1 2.00 2.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................................ACTGAGAAACTCTCTTCTGGGGTGAAG................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
.........................................................................................................................................................TAAGGCTGGTGTGAGCGTGGGAATGaga..................................................................... 28 aga 1.00 2.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
....................................................................................................................................................................TGAGCGTGGGAATGCAGAGGCGACAGG........................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
..........................................................CTTGACTGAGAAACTCTCTTCTGGGGT..................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................TCCTAAGGCTGGTGTGAGCGTGGGA........................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................GAGCGTGGGAATGCAGAGGCGACA............................................................. 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGGAAACTCTTGATGCTCTTGGCAG............................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........................................................................................................................................................TAAGGCTGGTGTGAGCGTGGGAATGCAt..................................................................... 28 t 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................TGGGGTGAAGGAAGGCTGGGCCCTTCC................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - -
..........................................................CTTGACTGAGAAACTCTCTTCTGGGGTGA................................................................................................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGTGAGCGTGGGAATGCAGAGGCGAC.............................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................TGGAAACTCTTGATGCTCTTGGCAGAa.......................................................................................................... 27 a 1.00 32.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................TTGACTGAGAAACTCTCTTCTGGGGT..................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGTGAGCGTGGGAATGCAGAGG.................................................................. 22 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................TAGGCAACAAGTGGGTGACTTGACTG........................................................................................................................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TTTGGAAACTCTTGATGCTCTTGGCA............................................................................................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................GGTGACTTGACTGAGgaaa.................................................................................................................................................................................. 19 gaaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - -
.....................................................GGTGACTTGACTGAGAAACTCTCTTC........................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................GACTGAGAAACTCTCTTCTGGGGTGAA.................................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................GAGCGTGGGAATGCAGAGGCGACAGGC.......................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................TTGTATGCCGCCTGCAAGGGACC............................. 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - -
.............................................................GACTGAGAAACTCTCTTCTGGGGTG.................................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................GGCTGGTGTGAGCGTGGGAATGCAGA.................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TAAGGCTGGTGTGAGCGTGGGAAT......................................................................... 24 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
..................................................................................................................................................................................................................TGCAAGGGACCTGGGCTCAGTAGCTAG............. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
...............................................................................................................................TGATGCTCTTGGCAGACACACTCTCt................................................................................................. 26 t 1.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................GGCTGGTGTGAGCGTGGGAATGCAGAG................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................................TTTGGAAACTCTTGATGCTCTTGGCAa............................................................................................................ 27 a 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................TTTGGAAACTCTTGATGCTCTTGGC.............................................................................................................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TAAGGCTGGTGTGAGCGTGGGAATGaa...................................................................... 27 aa 1.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................TTGGAAACTCTTGATGCTCTTGGCAGA........................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................TAGGCAACAAGTGGGTGACTTGACTGA....................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGTGAGCGTGGGAATGCAGAGGCGACA............................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................................TCTCCTAAGGCTGGTGTGAGCGTGG............................................................................. 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........................................................................................................................................................TAAGGCTGGTGTGAGCGTGGGAATGCAGA.................................................................... 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
...........................................................TTGACTGAGAAACTCTCTTCTGGGGTG.................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TGGTGTGAGCGTGGGAATGCAGAGGCGAC.............................................................. 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGCAAGGGACCTGGGCTCAGTAGa................ 24 a 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - -
...................................................................................................................TTTGGAAACTCTTGATGCTCTTGGCAta........................................................................................................... 28 ta 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................CTGGTGTGAGCGTGGGAATGCAGAGG.................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................TGACTGAGAAACTCTCTTCTGGGGT..................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................AAGGCTGGTGTGAGCGTGGGAATGC....................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................AGGAAGAGCCACAGCCTAGGCAA........................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................TGACTGAGAAACTCTCTTCTGGGGTG.................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TGCAAGGGACCTGGGCTCAGTAGC................ 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
.......................................................................................................................GAAACTCTTGATGCTCTTGGCAGACACAC...................................................................................................... 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................TGATGCTCTTGGCAGACACACTCTCCTA............................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -

Antisense strand
CCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAAGTGGGTGACTTGACTGAGAAACTCTCTTCTGGGGTGAAGGAAGGCTGGGCCCTTCCCCATCCTCATTTGGAAACTCTTGATGCTCTTGGCAGACACACTCTCCTAAGGCTGGTGTGAGCGTGGGAATGCAGAGGCGACAGGCTGCAGTTTGTATGCCGCCTGCAAGGGACCTGGGCTCAGTAGCTAGTGAAGAACTGTGC
.................................................................................................................((((.((.....)).))))((((..(((..(((.(((.((.......))...))).)))....)))))))...................................................................
................................................................................................................113...................................................................183.................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
..................................................................ACTCTCTTCTGGGGacca...................................................................................................................................................................... 18 acca 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 -