| Gene: Fibcd1 | ID: uc008jee.1_intron_5_0_chr2_31694292_r.5p | SPECIES: mm9 |
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(6) OTHER.mut |
(4) PIWI.ip |
(1) PIWI.mut |
(22) TESTES |
| CCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAGGTACCCACGGGCGCGGGGACGGGTGTGGGGGCTGGAGTTTGGTGAGCTTGTGCAGAGCTTAGTGGGAGCACCTGCTCTCCTCCTCCCCTCAGCGGAGTCTTGAACTCTGGGCTCCCTGCAGAAGGCACCCGCTGCAGCCAGTCCCCACCCCCACCGGAGACCCCTGTGCTTGCTTGTGCAGAGGGAAGAGAAGACCTATA .............................................................................((((((((((...((.((((..((((....((.....)).))))..)))).))..)))).(((((.(((((((........)))))))))).))..))).)))...................................................................... .............................................................................78....................................................................................................180.................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGGC.......................................................................... | 26 | 1 | 37.00 | 37.00 | 10.00 | 4.00 | 3.00 | 6.00 | 4.00 | 1.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | 1.00 | - | - | 2.00 | - | 1.00 | - | 1.00 |
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGGCAC........................................................................ | 28 | 1 | 15.00 | 15.00 | 7.00 | - | - | - | 2.00 | 3.00 | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - |
| ..................................................................................TGGAGTTTGGTGAGCTTGTGCAGAG............................................................................................................................................... | 25 | 1 | 11.00 | 11.00 | 2.00 | 8.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TTGAACTCTGGGCTCCCTGCAGAAGGC.......................................................................... | 27 | 1 | 7.00 | 7.00 | 1.00 | - | 2.00 | - | - | - | 1.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGGAGTTTGGTGAGCTTGTGCAGAGC.............................................................................................................................................. | 26 | 1 | 7.00 | 7.00 | 6.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGGCA......................................................................... | 27 | 1 | 5.00 | 5.00 | - | - | - | - | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................................................TTGAACTCTGGGCTCCCTGCAGAAG............................................................................ | 25 | 1 | 5.00 | 5.00 | - | 2.00 | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TTGAACTCTGGGCTCCCTGCAGAAGGCAC........................................................................ | 29 | 1 | 5.00 | 5.00 | - | - | 1.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TTGAACTCTGGGCTCCCTGCAGAAGGCt......................................................................... | 28 | t | 3.00 | 7.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TTGAACTCTGGGCTCCCTGCAGAAGG........................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TGAGGACCGACCGCGCGACAAACCGC.......................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - |
| ......................TGAGGACCGACCGCGCGACAAACCGCAGG....................................................................................................................................................................................................... | 29 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGG........................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TGAGGACCGACCGCGCGACAAACCGCA......................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TTGAACTCTGGGCTCCCTGCAGAAGGCA......................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................TTGTGCAGAGGGAAGAGAAGACCT... | 24 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................TTGAGGACCGACCGCGCGACAAACCGC.......................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................CTTGAACTCTGGGCTCCCTGCAG............................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................TGAGGACCGACCGCGCGACAAACCGCAG........................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................TTGAGGACCGACCGCGCGACAAACC............................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGGCACt....................................................................... | 29 | t | 1.00 | 15.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TTGAGGACCGACCGCGCGACAAACCG........................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TTGAACTCTGGGCTCCCTGCAagg............................................................................. | 24 | agg | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGGCACC....................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TTGAGGACCGACCGCGCGACAAACCGCA......................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................CCAACTTGAGGACCGACCGCGCGACA................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGGCACCC...................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGGtt......................................................................... | 27 | tt | 1.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGAACTCTGGGCTCCCTGCAGAAGGta......................................................................... | 27 | ta | 1.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAGGTACCCACGGGCGCGGGGACGGGTGTGGGGGCTGGAGTTTGGTGAGCTTGTGCAGAGCTTAGTGGGAGCACCTGCTCTCCTCCTCCCCTCAGCGGAGTCTTGAACTCTGGGCTCCCTGCAGAAGGCACCCGCTGCAGCCAGTCCCCACCCCCACCGGAGACCCCTGTGCTTGCTTGTGCAGAGGGAAGAGAAGACCTATA .............................................................................((((((((((...((.((((..((((....((.....)).))))..)))).))..)))).(((((.(((((((........)))))))))).))..))).)))...................................................................... .............................................................................78....................................................................................................180.................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................CTGCAGAAGGCACCCctga...................................................................... | 19 | ctga | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................CGCGACAAACCtctg............................................................................................................................................................................................................ | 15 | tctg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |