(1)
OTHER.ip
(4)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(35)
TESTES

Sense strand
CAGAAGACGATGATCCAGAAGGATTTGGAGAAAGAATTTGATAAGAAAGGGTGACGTATTTTTACATGTATTTCTGGTATTTAGGTTGAATTAGGTTGTTTCTTAACAGGACTGGGGGACTGGGGTTGAATCAGGGTCTTTGTATTCTAGGCAAGTGCTCTAACGTCTCTGTTATATTGCCCAGTCTTTTTATTATTTTTGTGATCATGTCTGTAAGTTTCCCATTTGCTGTCCTCCTGCCTCAGCCACC


Size Perfect hit Total Norm Perfect Norm SRR363964(GSM822766)
AdultGlobal 5'-RACEread_length: 105. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT1()
Testes Data. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
mjTestesWT3()
Testes Data. (testes)
.............................................................................................................................................GTATTCTAGGCAAGTGCTCTAACGTCTCTGTTATATTGCCCAGTCTTTTTAT......................................................... 52 1 114.00 114.00 114.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGac...................................................................................................................................................................................................... 28 ac 10.00 0.00 - 4.00 3.00 - - 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGtt...................................................................................................................................................................................................... 28 tt 10.00 0.00 - 5.00 3.00 - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGttt..................................................................................................................................................................................................... 29 ttt 10.00 0.00 - 5.00 - - 4.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGttta.................................................................................................................................................................................................... 30 ttta 8.00 0.00 - 1.00 - - 1.00 - - 4.00 - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGa....................................................................................................................................................................................................... 27 a 8.00 0.00 - 5.00 - 2.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.........................TGGAGAAAGAATTTGATAAGAAAGGtt...................................................................................................................................................................................................... 27 tt 5.00 0.00 - 1.00 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGacc..................................................................................................................................................................................................... 29 acc 5.00 0.00 - 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................TGGAGAAAGAATTTGATAAGAAAGGacc..................................................................................................................................................................................................... 28 acc 4.00 0.00 - 1.00 - 1.00 - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGt....................................................................................................................................................................................................... 27 t 4.00 0.00 - 1.00 - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - 1.00 -
.......................TTTGGAGAAAGAATTTGATAAGAAAGGttt..................................................................................................................................................................................................... 30 ttt 4.00 0.00 - - - - - 2.00 - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................TTTGGAGAAAGAATTTGATAAGAAAGGacc..................................................................................................................................................................................................... 30 acc 3.00 0.00 - 2.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................TTTGGAGAAAGAATTTGATAAGAAAGGac...................................................................................................................................................................................................... 29 ac 3.00 0.00 - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGacct.................................................................................................................................................................................................... 30 acct 3.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.......................TTTGGAGAAAGAATTTGATAAGAAAGGtt...................................................................................................................................................................................................... 29 tt 3.00 0.00 - 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........TGATCCAGAAGGATTTGGAGAAAGAATTT................................................................................................................................................................................................................... 29 1 3.00 3.00 - - - 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAG............................................................................................................................................................................................................. 21 1 3.00 3.00 - - - - - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - -
..GAAGACGATGATCCAGAAGGATTTGGAGA........................................................................................................................................................................................................................... 29 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........TGATCCAGAAGGATTTGGAGAAAGAAT..................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - 1.00 - - - - - - - -
..GAAGACGATGATCCAGAAGGATTTGGA............................................................................................................................................................................................................................. 27 1 2.00 2.00 - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
......................ATTTGGAGAAAGAATTTGATAAGAAAGGtt...................................................................................................................................................................................................... 30 tt 2.00 0.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................TGGAGAAAGAATTTGATAAGAAAGGa....................................................................................................................................................................................................... 26 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................GATTTGGAGAAAGAATTTGATAAGAAAGG........................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGcc...................................................................................................................................................................................................... 28 cc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................AGAAGGATTTGGAGAAAGAATTTGA................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGta....................................................................................................................................................................................................... 27 ta 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................AAGGATTTGGAGAAAGAAT..................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................AGAATTTGATAAGAAAGG........................................................................................................................................................................................................ 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
............ATCCAGAAGGATTTGGAGAAAGAAT..................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................TGGAGAAAGAATTTGATAAGAAAGGac...................................................................................................................................................................................................... 27 ac 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAA.......................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................TGGTATTTAGGTTGAATTAGGTTGTTT..................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................AGAAGGATTTGGAGAAAGAA...................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..............CCAGAAGGATTTGGAGAAA......................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
......................................TGATAAGAAAGGGTGACGTATTTTTAC......................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..GAAGACGATGATCCAGAAG..................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
........................TTGGAGAAAGAATTTGATAAGAAAGGct...................................................................................................................................................................................................... 28 ct 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.AGAAGACGATGATCCAGAAGGATTTGGAGtt.......................................................................................................................................................................................................................... 31 tt 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
......................................................................................TGAATTAGGTTGTTTCTTAACAGGACTG........................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
......................ATTTGGAGAAAGAATTTGATAAGAAAt......................................................................................................................................................................................................... 27 t 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................AGGTTGTTTCTTAACAGGACTGGGGGAC.................................................................................................................................. 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................ATTTGGAGAAAGAATTTGATAAGAAAGGac...................................................................................................................................................................................................... 30 ac 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............CCAGAAGGATTTGGAGAAAGAATTTGATA............................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........TGATCCAGAAGGATTTGGAGAAAGA....................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TTGGAGAAAGAATTTGATAAGAAAGGatta.................................................................................................................................................................................................... 30 atta 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................AGGATTTGGAGAAAGAATTTGATAAGAAA.......................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........TGATCCAGAAGGATTTGGAGAAAGAATT.................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................ATTTGGAGAAAGAATTTGATAAGAAAGGacc..................................................................................................................................................................................................... 31 acc 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................GAAGGATTTGGAGAAAGA....................................................................................................................................................................................................................... 18 3 0.33 0.33 - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............CAGAAGGATTTGGAGA........................................................................................................................................................................................................................... 16 11 0.09 0.09 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.09

Antisense strand
CAGAAGACGATGATCCAGAAGGATTTGGAGAAAGAATTTGATAAGAAAGGGTGACGTATTTTTACATGTATTTCTGGTATTTAGGTTGAATTAGGTTGTTTCTTAACAGGACTGGGGGACTGGGGTTGAATCAGGGTCTTTGTATTCTAGGCAAGTGCTCTAACGTCTCTGTTATATTGCCCAGTCTTTTTATTATTTTTGTGATCATGTCTGTAAGTTTCCCATTTGCTGTCCTCCTGCCTCAGCCACC


Size Perfect hit Total Norm Perfect Norm SRR363964(GSM822766)
AdultGlobal 5'-RACEread_length: 105. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT1()
Testes Data. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
mjTestesWT3()
Testes Data. (testes)
....................................................................................................................................................AAGTGCTCTAACGTtcgg.................................................................................... 18 tcgg 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -