| Gene: 1700026L06Rik | ID: uc008iza.1_intron_3_0_chr2_28551604_r.5p | SPECIES: mm9 |
|
|
(5) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(21) TESTES |
| CAAGCTTCTGGGCACTCTGTGAGGCGAAGGCCAGTCCAAGTCAAACCAGGGTAAAGGGGGATGGAGCGCCGGCGACGAGCTGGGTCGAAAACACTATGGGAGTGGGGGAGAAAGAGGTGGAGGTGTCCTGGCCTAGGGGGAGGAAAGCTGCGTGTAGCTGTGGAAGAGGCAAGGGTGGCATCGTGGAGGAAGGACTCTGTGTAGTAACCCAGAGGGAGGTACACACAGCCTACGATGATAGCCACAAGTC |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................TAGCTGTGGAAGAGGCAAGGGTGGCATC.................................................................... | 28 | 1 | 18.00 | 18.00 | 6.00 | - | 2.00 | 9.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........TGGGCACTCTGTGAGGCGAAGGCCAGT....................................................................................................................................................................................................................... | 27 | 1 | 14.00 | 14.00 | - | 3.00 | - | - | 1.00 | 4.00 | 5.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ........TGGGCACTCTGTGAGGCGAAGGCCAG........................................................................................................................................................................................................................ | 26 | 1 | 13.00 | 13.00 | - | 4.00 | 1.00 | - | 4.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | 1.00 | 1.00 | - | - | - | - |
| ........TGGGCACTCTGTGAGGCGAAGGCCAGTC...................................................................................................................................................................................................................... | 28 | 1 | 7.00 | 7.00 | - | 1.00 | - | - | - | 3.00 | - | - | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - |
| ........TGGGCACTCTGTGAGGCGAAGGCCAGTCC..................................................................................................................................................................................................................... | 29 | 1 | 5.00 | 5.00 | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - |
| .....TTCTGGGCACTCTGTGAGGCGAAG............................................................................................................................................................................................................................. | 24 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....CTTCTGGGCACTCTGTGAGGCGAAGGC........................................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................TAGCTGTGGAAGAGGCAAGGGTGGCAT..................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TGGGCACTCTGTGAGGCGAAGGCCA......................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TGGAGGAAGGACTCTGTGTAGTAACCC........................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - |
| ...............TCTGTGAGGCGAAGGCCAGTCCAAGT................................................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGCGTGTAGCTGTGGAAGAGGCAAGGG........................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................CAGCCTACGATGATAGCCA...... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..........................................................................................................................................................TAGCTGTGGAAGAGGCAAGGGTGGCA...................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TCTGGGCACTCTGTGAGGCGA............................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGCGTGTAGCTGTGGAAGAGGCAAGGGTG......................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................AACCAGGGTAAAGGGGGATGGA......................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................GGAGGAAGGACTCTGTGTAGTAACCCAGA..................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................CGAGCTGGGTCGAAAACACTATGGGAGT................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAAAGGGGGATGGAGgctt.................................................................................................................................................................................... | 19 | gctt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...........................................................................................................................................................AGCTGTGGAAGAGGCAAGGGTGGC....................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................................................TATGGGAGTGGGGGAGAAAG........................................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGCGTGTAGCTGTGGAAGAGGCAAGG............................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................GTGGAAGAGGCAAGGGTGGCATCGTG................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....CTTCTGGGCACTCTGTGAGGCGAAG............................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................CGCCGGCGACGtcgc......................................................................................................................................................................... | 15 | tcgc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ................................................................................................................................TGGCCTAGGGGGAGGAAAGCTG.................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| CAAGCTTCTGGGCACTCTGTGAGGCGAAGGCCAGTCCAAGTCAAACCAGGGTAAAGGGGGATGGAGCGCCGGCGACGAGCTGGGTCGAAAACACTATGGGAGTGGGGGAGAAAGAGGTGGAGGTGTCCTGGCCTAGGGGGAGGAAAGCTGCGTGTAGCTGTGGAAGAGGCAAGGGTGGCATCGTGGAGGAAGGACTCTGTGTAGTAACCCAGAGGGAGGTACACACAGCCTACGATGATAGCCACAAGTC |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|