| Gene: Rxra | ID: uc008ixs.1_intron_0_0_chr2_27532981_f.5p | SPECIES: mm9 |
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(9) OTHER.mut |
(5) PIWI.ip |
(3) PIWI.mut |
(24) TESTES |
| TGGGCATGAGTTAGTCGCAGACATGGACACCAAACATTTCCTGCCGCTCGGTGAGTGCTGGCCGCGGCGGCGCGGGCGAGGGAGGGGGCCGGGGCTGGCGGGGCGGGGGCGCGTGCGCAGCGCGCGCTGGGGGTCCGGCCGGGCCCATTGGCCCCGAGCCGTGGCGGTACCGAGAGTTAGCGCGCCGGGCCCGGGGAGGCGAGTGGGCACAGGGCAACTTTTCCCGGGCCCAGGCGCGCGGCGGGAGAGG ......................................................................................................((...(((((((((...)))))))))..((((((....)))))).....(((((.(((.(((((((...........)).)))))))).)))))..)).................................................. ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................CCGCGGCGGCGCGGG.............................................................................................................................................................................. | 15 | 9 | 40.11 | 40.11 | 19.56 | 15.89 | - | - | - | - | 2.33 | - | - | - | 0.78 | 1.56 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TGAGTTAGTCGCAGACATGGACACCA.......................................................................................................................................................................................................................... | 26 | 1 | 12.00 | 12.00 | - | - | 1.00 | 3.00 | - | 4.00 | - | 2.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......TGAGTTAGTCGCAGACATGGACACC........................................................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......TGAGTTAGTCGCAGACATGGACACCAAAC....................................................................................................................................................................................................................... | 29 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGcgtc........................................................................................................................................................................... | 18 | cgtc | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................CGCTCGGTGAGTGCaat............................................................................................................................................................................................. | 17 | aat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................TTAGCGCGCCGGGCCgtac....................................................... | 19 | gtac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........TAGTCGCAGACATGGACACCAAAC....................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .........GTTAGTCGCAGACATGGACACC........................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......GAGTTAGTCGCAGACATGGtt.............................................................................................................................................................................................................................. | 21 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................GCCGCGGCGGCGCGGGgtc........................................................................................................................................................................... | 19 | gtc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....ATGAGTTAGTCGCAGACATGGA............................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TGAGTTAGTCGCAGACATGGACA............................................................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................GCGGGCGAGGGAGtt.................................................................................................................................................................... | 15 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................ATGGACACCAAACATTTCCTGCCGCTC......................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................GACACCAAACATTTCCTGCCGCTCGG....................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TAGTCGCAGACATGGACACCAAACATT.................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..GGCATGAGTTAGTCGCAGACATGG................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGGC............................................................................................................................................................................. | 16 | 5 | 0.80 | 0.80 | 0.20 | 0.20 | - | - | - | - | 0.40 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGGggc........................................................................................................................................................................... | 18 | ggc | 0.56 | 40.11 | 0.11 | 0.22 | - | - | - | - | 0.22 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGGgcc........................................................................................................................................................................... | 18 | gcc | 0.44 | 40.11 | - | - | - | - | - | - | 0.11 | - | - | - | - | - | 0.22 | - | - | - | - | - | - | - | 0.11 | - | - | - |
| ....................................................................................................................................................................................CGCGCCGGGCCCGGG....................................................... | 15 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGGgtt........................................................................................................................................................................... | 18 | gtt | 0.22 | 40.11 | - | - | - | - | - | - | - | - | - | - | - | - | 0.22 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGGgta........................................................................................................................................................................... | 18 | gta | 0.22 | 40.11 | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 | - | - | - | - | - | - | - | - | - | 0.11 | - |
| .............................................................CCGCGGCGGCGCGGGggg........................................................................................................................................................................... | 18 | ggg | 0.11 | 40.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGGgga........................................................................................................................................................................... | 18 | gga | 0.11 | 40.11 | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGGttc........................................................................................................................................................................... | 18 | ttc | 0.11 | 40.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 | - | - |
| .............................................................CCGCGGCGGCGCGGGgg............................................................................................................................................................................ | 17 | gg | 0.11 | 40.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCGCGGCGGCGCGGGgtg........................................................................................................................................................................... | 18 | gtg | 0.11 | 40.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |
| TGGGCATGAGTTAGTCGCAGACATGGACACCAAACATTTCCTGCCGCTCGGTGAGTGCTGGCCGCGGCGGCGCGGGCGAGGGAGGGGGCCGGGGCTGGCGGGGCGGGGGCGCGTGCGCAGCGCGCGCTGGGGGTCCGGCCGGGCCCATTGGCCCCGAGCCGTGGCGGTACCGAGAGTTAGCGCGCCGGGCCCGGGGAGGCGAGTGGGCACAGGGCAACTTTTCCCGGGCCCAGGCGCGCGGCGGGAGAGG ......................................................................................................((...(((((((((...)))))))))..((((((....)))))).....(((((.(((.(((((((...........)).)))))))).)))))..)).................................................. ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......TGAGTTAGTCGCAGACATGG................................................................................................................................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................CGAGCCGTGGCGGTACCGAGAGTTA....................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .GGGCATGAGTTAGTCGCAGACATGGACA............................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................CCGGGCCCAGGCGCGCGGCGGGAGAaa.. | 27 | aa | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........AGTTAGTCGCAGACATGGA............................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................CGCGCCGGGCCCGGG....................................................... | 15 | 4 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |