| Gene: Pmpca | ID: uc008ivd.1_intron_0_0_chr2_26244953_f.3p | SPECIES: mm9 |
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(2) OTHER.mut |
(1) OVARY |
(6) PIWI.ip |
(18) TESTES |
| CTCAGTAGTTAGGCCTACTGACTGCTTCCCCTGGGTTTGGCTACCAGCGCCCATTTGGTGGCTCACAACCATCTATCTATAACTCCACTATCCAGGGGATCCAAAGCCCTCTTCTGACCTCCATGGACAACGGGCATGCCTGTGATGAACATACATCCGTGACATAAAATAAGACTAAATATTTTGCTGCTCTGCTGTAGGTTTGGATCTCCTGCACACAGACGGTTCAGCAGTGGTGCCACCTACCCCA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesWT2() Testes Data. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesWT3() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................CTCCATGGACAACGGGCATGCCTGTGATGAACATACATCCGTGACATAAAAT................................................................................ | 52 | 1 | 98.00 | 98.00 | 98.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTGGATCTCCTGCACACAGACGGTTC...................... | 26 | 1 | 4.00 | 4.00 | - | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................................................................................................................................................................................TAGGTTTGGATCTCCTGCACACAGACG.......................... | 27 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................TTCTGACCTCCATGGACAACGGGCAT................................................................................................................. | 26 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................TAGGTTTGGATCTCCTGCACACAGACGG......................... | 28 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................................................................................................................................................................TGCACACAGACGGTTCAGCAGTGGTGCCAC........ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TGGACAACGGGCATGCCTGTGATGAACAT.................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTGGATCTCCTGCACACAGACGGTTCA..................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................TGACCTCCATGGACAACGGGCATGCCT............................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................TCTGACCTCCATGGACAACGGGCATG................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TGCACACAGACGGTTCAGCAGTGGTGC........... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GGTTTGGATCTCCTGCACACAGACGGgt....................... | 28 | gt | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...........................................................................................................................................................................................................TGGATCTCCTGCACACAGACGGTTCAGt................... | 28 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................TTCTGACCTCCATGGACAACGGGCATG................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............GCCTACTGACTGCTTCCCCTGGGTTTGGCTA............................................................................................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................CAGACGGTTCAGCAGTGGTGCCACCT...... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..........................................................................................................................ATGGACAACGGGCATGC............................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TGGACAACGGGCATGCCTGTGATGAA..................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ........................................................................................................AGCCCTCTTCTGACacca................................................................................................................................ | 18 | acca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................................................................................................................................AGGTTTGGATCTCCTGCACACAGACGG......................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GGTTTGGATCTCCTGCACACAGACGG......................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TACTGACTGCTTCCCCTGGGTTTGGCTAt.............................................................................................................................................................................................................. | 29 | t | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTCAGTAGTTAGGCCTACTGACTGCTTCCCCTGGGTTTGGCTACCAGCGCCCATTTGGTGGCTCACAACCATCTATCTATAACTCCACTATCCAGGGGATCCAAAGCCCTCTTCTGACCTCCATGGACAACGGGCATGCCTGTGATGAACATACATCCGTGACATAAAATAAGACTAAATATTTTGCTGCTCTGCTGTAGGTTTGGATCTCCTGCACACAGACGGTTCAGCAGTGGTGCCACCTACCCCA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesWT2() Testes Data. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesWT3() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................TTTGCTGCTCTGCTGccag..................................................... | 19 | ccag | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................GTGGCTCACAACCATCTATCTATA......................................................................................................................................................................... | 24 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 | - |
| ............................................................GCTCACAACCATCTATCTATA......................................................................................................................................................................... | 21 | 16 | 0.06 | 0.06 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.06 |