| Gene: Abca2 | ID: uc008isc.1_intron_32_0_chr2_25299508_f | SPECIES: mm9 |
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(3) OTHER.mut |
(1) OVARY |
(8) PIWI.ip |
(2) PIWI.mut |
(22) TESTES |
| ACCAACCACCCCATGAACAAGACCAGTGCTAGCCTCTCCCTGGATTACCTGTGAGTGAGGCAGACCAAGTTGAGGAGGGGCAGGACCACCTCGTCCTGACACCTCCTGGAACTGAGTGCTGTCCCCTTCTAGACTGCAGGGCACAGATGTGGTCATCGCCATCTTCATCATTGTGGCCATGT ....................................................(((...(((((((((..((.((((((..((((((......))))))...)))))).))..)).)).)))))...)))..................................................... ..................................................51...............................................................................132................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGG........................................................................................................ | 28 | 1 | 16.00 | 16.00 | 4.00 | 1.00 | 1.00 | 2.00 | 2.00 | 1.00 | - | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCAGACCAAGTTGAGGAG......................................................................................................... | 27 | 1 | 15.00 | 15.00 | 5.00 | - | 3.00 | - | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCAGACCAAGTTGAGGA.......................................................................................................... | 26 | 1 | 15.00 | 15.00 | 1.00 | 6.00 | - | 3.00 | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | 1.00 | 1.00 | - | - | - | 1.00 |
| ..................................................GTGAGTGAGGCAGACCAAGTTGAGG........................................................................................................... | 25 | 1 | 10.00 | 10.00 | 1.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | 3.00 | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - |
| ...................................................TGAGTGAGGCAGACCAAGTTGAGGAG......................................................................................................... | 26 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGt........................................................................................................ | 28 | t | 4.00 | 15.00 | 1.00 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTGAGGCAGACCAAGTTGAGGAGG........................................................................................................ | 27 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTGAGGCAGACCAAGTTGAGGA.......................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TGAACAAGACCAGTGCTAGCCTCTCCC.............................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGGGG...................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............TGAACAAGACCAGTGCTAGCCTCTCCCT............................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTGAGGCAGACCAAGTTG.............................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTGAGGCAGACCAAGTTGAGGAGGG....................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCAGACCAAGTTGAGGAttat...................................................................................................... | 30 | ttat | 1.00 | 15.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................TGGAACTGAGTGCTGTCCCCTTCTAGA................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................ACCAAGTTGAGGAGGGGCAGGACCACC............................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCAGACCAAGTTGAG............................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTGAGGCAGACCAAGTTGAGGgg......................................................................................................... | 26 | gg | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .............TGAACAAGACCAGTGCTAGCCTCTCCCTG............................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................TGAGTGAGGCAGACCAAGTTGAGG........................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................AACTGAGTGCTGTCCCCTTCTAGtat............................................... | 26 | tat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...................................................TGAGTGAGGCAGACCAAGTTGAG............................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ACCAACCACCCCATGAACAAGACCAGTGCTAGCCTCTCCCTGGATTACCTGTGAGTGAGGCAGACCAAGTTGAGGAGGGGCAGGACCACCTCGTCCTGACACCTCCTGGAACTGAGTGCTGTCCCCTTCTAGACTGCAGGGCACAGATGTGGTCATCGCCATCTTCATCATTGTGGCCATGT ....................................................(((...(((((((((..((.((((((..((((((......))))))...)))))).))..)).)).)))))...)))..................................................... ..................................................51...............................................................................132................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
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| ................................................................................GACCACCTCGTCgag....................................................................................... | 15 | gag | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |