| Gene: Ndor1 | ID: uc008iqx.1_intron_9_0_chr2_25105718_r | SPECIES: mm9 |
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(1) OTHER.mut |
(7) PIWI.ip |
(1) PIWI.mut |
(16) TESTES |
| GGCAGTGCGCTTCTGCCCCCATGTCTGGGTGATGACCAGCATGAGCTGGGGTAGGTGTTGGTGTCAGTGTTCCTCTGTGGCAACCCTTCTTGGCCCTGGCTCACAGAGGCCAATGCCTGTACTCTTTCCTAGGCCTGATGCTGCCATTGACCCCTGGGTAGGAGATCTTTGGGAGAAGATAA ....................................................(((.((((.((.(((.......))))).)))))))....(((....)))................................................................................. ..................................................51...................................................104............................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
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| ..................................................GTAGGTGTTGGTGTCAGTGTTCCTCT.......................................................................................................... | 26 | 1 | 12.00 | 12.00 | 3.00 | 4.00 | - | - | 1.00 | 1.00 | - | - | - | 1.00 | 1.00 | - | 1.00 | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAGTGTTCCTC........................................................................................................... | 25 | 1 | 7.00 | 7.00 | 4.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - |
| ..................................................GTAGGTGTTGGTGTCAGTGTTCCTCa.......................................................................................................... | 26 | a | 3.00 | 7.00 | - | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................TGGCAACCCTTCTTGGCCCTGGC.................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAGTGTTCCTCTGT........................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAGTGTTCCTt........................................................................................................... | 25 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TGTACTCTTTCCTAGGCCTGATGCTGC...................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAGTGTTCCTCTG......................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAGTGTTCCTCc.......................................................................................................... | 26 | c | 1.00 | 7.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAG................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................CCCTGGCTCACAGAGGCCtgc.................................................................... | 21 | tgc | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................AGGTGTTGGTGTCAGTGTTt.............................................................................................................. | 20 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAGGTGTTGGTGTCAGTGTTCCTCT.......................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAGTGT................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAGTGTTCCcct.......................................................................................................... | 26 | cct | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGTGTTGGTGTCAGTGTT............................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..................................................................................................................................................TTGACCCCTGGGTAGGAGATCTTTGG.......... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| GGCAGTGCGCTTCTGCCCCCATGTCTGGGTGATGACCAGCATGAGCTGGGGTAGGTGTTGGTGTCAGTGTTCCTCTGTGGCAACCCTTCTTGGCCCTGGCTCACAGAGGCCAATGCCTGTACTCTTTCCTAGGCCTGATGCTGCCATTGACCCCTGGGTAGGAGATCTTTGGGAGAAGATAA ....................................................(((.((((.((.(((.......))))).)))))))....(((....)))................................................................................. ..................................................51...................................................104............................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
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