| Gene: Rsu1 | ID: uc008ijw.1_intron_5_0_chr2_13146053_r.3p | SPECIES: mm9 |
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(5) OTHER.mut |
(1) OVARY |
(2) PIWI.mut |
(19) TESTES |
| TGCCAGGTAGTTTGATCTAATCAGACAAGAGGAAACACTTCCGTTCCACCTGGTCAAGAATTTTTAGCCATGAAAGTAAGAAAACCCACAAAATGCATGTGGACAGCACTGGGGTTTGACCTTACTTGCGTTCAATAGGGAAGTGTGTGGCTAGCATCCTTTGCCCCTTGAATTCACATGCTGCATCTCCATCCCTATAGCTGTGCCACCAAATGTAGCGGAACTGAAGAACTTGGAGGTACTAAACTTC ....................................................................................................((((.(((.(((((.....)))))..))))))).(((((((((.(((..((..(((.....)))....((....))...))..)))))...))))))).................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................................TGTAGCGGAACTGAAGAACTTGGAGGT.......... | 27 | 1 | 11.00 | 11.00 | - | 3.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | 2.00 | - | - | - | - | 1.00 | - | - | 1.00 | - |
| .....................................................................................................................................................................................................................TGTAGCGGAACTGAAGAACTTGGAGG........... | 26 | 1 | 9.00 | 9.00 | - | 3.00 | - | - | 1.00 | - | - | 1.00 | 2.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTAGCGGAACTGAAG..................... | 16 | 1 | 8.00 | 8.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................ATGTAGCGGAACTGAAGAACTTGGAGG........... | 27 | 1 | 8.00 | 8.00 | 7.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................AATAGGGAAGTGTGTGGCTAGCAT............................................................................................. | 24 | 1 | 6.00 | 6.00 | - | - | - | 4.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 |
| ...................................................................................................................................................................................................................AATGTAGCGGAACTGAAGAACTTGGA............. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................ACCAAATGTAGCGGAACTGAAG..................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................AAATGTAGCGGAACTGAAGAACTTGG.............. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TAGCGGAACTGAAGAACTTGGAGGTAa........ | 27 | a | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................AACTGAAGAACTTGGAGGTACTAAA.... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................................................................................................................................................................................................................TAGCGGAACTGAAGAACTTGGAGGTAC........ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTAGCGGAACTGAAGAACTTGGAGGTACTAAA.... | 33 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................AATAGGGAAGTGTGTGGCTAG................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................AATGTAGCGGAACTGAAGAA................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTAGCGGAACTGAAGAAC.................. | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................GTAGCGGAACTGAAGAACTTGGAGGTACTA...... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTAGCGGAACTGAAGAACTTGGAGt........... | 26 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................AATAGGGAAGTGTGTGGCTAGC............................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................GCGGAACTGAAGAACTTGGAGGTACTAAAC... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................GTAGCGGAACTGAAGAACTTGGAGGTACT....... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................ATGTAGCGGAACTGAAGAACTTGGAGGTA......... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................TGTGCCACCAAATGTAGCGGAACTGAAG..................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................................................................................................................ATGTAGCGGAACTGAAGAAC.................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................AGCGGAACTGAAGAACTT................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................ATGTAGCGGAACTGAAGAACTTGG.............. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTAGCGGAACTGAAGAACTTGGAGGa.......... | 27 | a | 1.00 | 9.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................GCGGAACTGAAGAACTTGGA............. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................GTAGCGGAACTGAAGAACTTGGA............. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................GTAGCGGAACTGAAGAACTTGG.............. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TAGCGGAACTGAAGAACTTGGAGGTACT....... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................ATGTAGCGGAACTGAAGAACTTGGA............. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTAGCGGAACTGAAGAACTTGGAGGTACT....... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TAGCGGAACTGAAGAACTTGGAGGT.......... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGCCAGGTAGTTTGATCTAATCAGACAAGAGGAAACACTTCCGTTCCACCTGGTCAAGAATTTTTAGCCATGAAAGTAAGAAAACCCACAAAATGCATGTGGACAGCACTGGGGTTTGACCTTACTTGCGTTCAATAGGGAAGTGTGTGGCTAGCATCCTTTGCCCCTTGAATTCACATGCTGCATCTCCATCCCTATAGCTGTGCCACCAAATGTAGCGGAACTGAAGAACTTGGAGGTACTAAACTTC ....................................................................................................((((.(((.(((((.....)))))..))))))).(((((((((.(((..((..(((.....)))....((....))...))..)))))...))))))).................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................GAAAACCCACAAAATgg............................................................................................................................................................ | 17 | gg | 4.00 | 0.00 | - | - | 3.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................ACTTGCGTTCAAtgc................................................................................................................... | 15 | tgc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................AAAACCCACAAAATGagga........................................................................................................................................................... | 19 | agga | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |