| Gene: Sfmbt2 | ID: uc008ihz.1_intron_15_0_chr2_10497139_f.3p | SPECIES: mm9 |
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(2) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(22) TESTES |
| AAGATTCCTCAGAGTGAGTATTGCTGTCACTGGAAACTGAGGTACAGTGGCAGGGGAACAAGCAAACAAACAAACAAACCAAAGTAGCTGTTGGTTAAAATTGGGACTAGTGAGGCCAGAGATCTCCCAGTGGGCTGTATGGCTCTGTGATGAACCCATCATTGACTATAATCTCAGTAAAACTGTCTTCCTCCCTGCAGCCTATTATTATGGAAAAAGAAGAAGGGTCATTCAGTCGTCACTTAGAGTC .........................................................................................(((.((((..(((((((((..((....)).))...)))))))(((((....)))))..)))).)))............................................................................................... .........................................................................................90.....................................................................161....................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR037900(GSM510436) testes_rep1. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................GCTCTGTGATGAACCC............................................................................................. | 16 | 4 | 114.25 | 114.25 | 64.75 | 16.00 | 11.00 | 14.25 | 4.50 | 3.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | 0.25 |
| .............................................................................................................................................GCTCTGTGATGAACC.............................................................................................. | 15 | 10 | 77.80 | 77.80 | 36.50 | 19.40 | 7.80 | 1.60 | 8.50 | 3.90 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.10 | - |
| ..................................................................................................................................................................................................................TGGAAAAAGAAGAAGGGTCATTCAGTC............. | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - |
| .............................................................................................................................................GCTCTGTGATGAACCCATa.......................................................................................... | 19 | a | 3.00 | 0.00 | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................CTCTGTGATGAACCC............................................................................................. | 15 | 10 | 2.50 | 2.50 | 1.60 | 0.30 | 0.40 | - | 0.10 | 0.10 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GCTCTGTGATGAACg.............................................................................................. | 15 | g | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TATTATTATGGAAAAAGAAGAAGGGTC..................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TTATTATGGAAAAAGAAGAAGGGTCATT.................. | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...............................................................................................................................................................................................................................AGGGTCATTCAGTCGTCACTTA..... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................AAAAAGAAGAAGGGTCATTCAGTCGTCAC........ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................................................................................................................................................AAAGAAGAAGGGTCATTCAGTCGTCACT....... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................TTAAAATTGGGACTAcct.......................................................................................................................................... | 18 | cct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................TGGAAAAAGAAGAAGGGTCATTCAGT.............. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...............................................................................................................................................................................................................TTATGGAAAAAGAAGAAGGGTCATTCAGTC............. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GCTCTGTGATGAACCCA............................................................................................ | 17 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GCTCTGTGATGAACCCAatg......................................................................................... | 20 | atg | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GCTCTGTGATGAACCCg............................................................................................ | 17 | g | 0.25 | 114.25 | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GCTCTGTGATGAACCtca........................................................................................... | 18 | tca | 0.10 | 77.80 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.10 | - |
| AAGATTCCTCAGAGTGAGTATTGCTGTCACTGGAAACTGAGGTACAGTGGCAGGGGAACAAGCAAACAAACAAACAAACCAAAGTAGCTGTTGGTTAAAATTGGGACTAGTGAGGCCAGAGATCTCCCAGTGGGCTGTATGGCTCTGTGATGAACCCATCATTGACTATAATCTCAGTAAAACTGTCTTCCTCCCTGCAGCCTATTATTATGGAAAAAGAAGAAGGGTCATTCAGTCGTCACTTAGAGTC .........................................................................................(((.((((..(((((((((..((....)).))...)))))))(((((....)))))..)))).)))............................................................................................... .........................................................................................90.....................................................................161....................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR037900(GSM510436) testes_rep1. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) |
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| ...........................................................................................................................................................................................................TTATGGAAAAAGAAgaga............................. | 18 | gaga | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - |