| Gene: Tdrd1 | ID: uc008hzi.1_intron_18_0_chr19_56933165_f.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(3) PIWI.ip |
(14) TESTES |
| GAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAGGTGATGCCTTTAAACCGTCTGTAGTTCAAGTTCATATTAGGGTTTGCTTTGCTCTCTAACACTTTGGTTACAGTACACAAGTGGGTTTCAGTGAAATTTCCATACATAACATTGCTCTTAATTGCCTACACCTGCCATCCTTCATCCTTCCTGGCTGCTTCCTCGGGTCTCCTTCCTGAGTCCATTTCTCTTCTGCCTGC ..................................................................(((((((((..((((.....((((((...((...)).)))))).))))..))))))).))....((((((..(((((................))))).........))))))....................................................................... ............................................................61.............................................................................................................................188............................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................GGGTTTCAGTGAAATTTCCATACATAACATTGCTCTTAATTGCCTACACCTG.................................................................. | 52 | 1 | 45.00 | 45.00 | 45.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TAATCAACATAAGCAGATCGACAGCCAC.................................................................................................................................................................................................................. | 28 | 1 | 3.00 | 3.00 | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................TAAGCAGATCGACAGCCACAGGGTGCAAGc....................................................................................................................................................................................................... | 30 | c | 2.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - |
| ..........GCTAATCAACATAAGCAGATCGACAGCCAC.................................................................................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................AAGCAGATCGACAGCCACAGGGTGCA.......................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................AACATAAGCAGATCGACAGCCACAGG............................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........TGCTAATCAACATAAGCAGATCGACAGCC.................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................AGCAGATCGACAGCCACAGGGTGCAA......................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................TAAGCAGATCGACAGCCACAGGGTGCA.......................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................AAGCAGATCGACAGCCACAGGGTGCAAG........................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................AAGCAGATCGACAGCCACAGGGTG............................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............ATCAACATAAGCAGATCGACAGCCAC.................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........TGCTAATCAACATAAGCAGATCGACAGC..................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............TAATCAACATAAGCAGATCcac........................................................................................................................................................................................................................ | 22 | cac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................TAAGCAGATCGACAGCCACAGGGTGC........................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................CAGATCGACAGCCACAGGGTGCAAG........................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........CTAATCAACATAAGCAGATCGACAGCCAC.................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ....................ATAAGCAGATCGACAGCCAC.................................................................................................................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................ACATAAGCAGATCGACAGCCACAGG............................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TCAACATAAGCAGATCGACAGCCACAG................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................CGTCTGTAGTTCAAcggt....................................................................................................................................................................... | 18 | cggt | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| GAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAGGTGATGCCTTTAAACCGTCTGTAGTTCAAGTTCATATTAGGGTTTGCTTTGCTCTCTAACACTTTGGTTACAGTACACAAGTGGGTTTCAGTGAAATTTCCATACATAACATTGCTCTTAATTGCCTACACCTGCCATCCTTCATCCTTCCTGGCTGCTTCCTCGGGTCTCCTTCCTGAGTCCATTTCTCTTCTGCCTGC ..................................................................(((((((((..((((.....((((((...((...)).)))))).))))..))))))).))....((((((..(((((................))))).........))))))....................................................................... ............................................................61.............................................................................................................................188............................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................................................CTTCCTCGGGTCTaaac.............................. | 17 | aaac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |