(6)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(4)
PIWI.mut
(27)
TESTES

Sense strand
CTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAGGTGAGTGGCTTCTTTCTGGTCCGTTAGTTGCAGGTGCTGGGACTAACCTTCATTCCCATGAGTCGTGGTGGCTGCTGGTGGCATCCATAAAACTAGGGGCCCAGGAACAACTTCACAACTTTCCCGTGAACAGCAGTGTCCTGTTCCTGGCCACAGCTTTGGCAAGTGGGGCTTATTGAGATTATAACCCACACAGGCCC
.....................................................................((((((((((.(((...))).)))))))........(((((...))))).((((.(((((............))))).))))..)))..............................................................................................
.....................................................................70...............................................................................................167.................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
...................................................................................................TCATTCCCATGAGTCGTGGTGGCTGC............................................................................................................................. 26 1 11.00 11.00 8.00 - - 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................TGAGTCGTGGTGGCTGCTGGTGGCA..................................................................................................................... 25 1 8.00 8.00 5.00 - - - - - - - - - - - 1.00 - 1.00 - 1.00 - - - - - - - - - - -
..................................................................................................TTCATTCCCATGAGTCGTGGTGGCTGC............................................................................................................................. 27 1 6.00 6.00 - - - 4.00 - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
............................................................................................................TGAGTCGTGGTGGCTGCTGGTGGC...................................................................................................................... 24 1 6.00 6.00 4.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................TAGTTGCAGGTGCTGGGACTAACCTT...................................................................................................................................................... 26 1 5.00 5.00 - 2.00 1.00 - - - - - 1.00 - - - - - - - - 1.00 - - - - - - - - - -
.........................................................................................................................................TAAAACTAGGGGCCCAGGAACAACTT....................................................................................... 26 1 4.00 4.00 - 1.00 - - 1.00 - - 2.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................TAGTTGCAGGTGCTGGGACTAACCTTC..................................................................................................................................................... 27 1 3.00 3.00 - - - - - - - - - 1.00 1.00 - - 1.00 - - - - - - - - - - - - - -
........TGGTGGACGTCTACGGCCTCACGCGG........................................................................................................................................................................................................................ 26 1 3.00 3.00 - 1.00 - - - - - - - - - 1.00 1.00 - - - - - - - - - - - - - - -
.........................................................................................................................................TAAAACTAGGGGCCCAGGAACAACTTC...................................................................................... 27 1 3.00 3.00 - 1.00 - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
........TGGTGGACGTCTACGGCCTCACGC.......................................................................................................................................................................................................................... 24 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
............................................................................................................TGAGTCGTGGTGGCTGCTGGTGGCATC................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - 1.00 1.00 - - - - -
................................................................TCTGGTCCGTTAGTTGCAGGTGCTGG................................................................................................................................................................ 26 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
.....................................................................................................................................TCCATAAAACTAGGGGCCCAGGAAC............................................................................................ 25 1 2.00 2.00 - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.TGGGCCCTGGTGGACGTCTACGGCC................................................................................................................................................................................................................................ 25 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TGGCCACAGCTTTGGCAAGTGGGGCTT.......................... 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................TGAGTCGTGGTGGCTGCTGGTGGCAT.................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - -
...........................................................TTCTTTCTGGTCCGTTAGTTGCAG....................................................................................................................................................................... 24 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TTTCTGGTCCGTTAGTTGCAGGTGC................................................................................................................................................................... 25 1 2.00 2.00 - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................TTTCTGGTCCGTTAGTTGCAGGTGCT.................................................................................................................................................................. 26 1 2.00 2.00 - - - - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TTTGGCAAGTGGGGCTTATTGAGAT.................. 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................TCACGCGGGGTGTCCAGCTGCTAG........................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................TAGGTGAGTGGCTTCTTTCTGGTCC.................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TGAGATTATAACCCACACAGG... 21 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TGGCAAGTGGGGCTTATTGAGATTA................ 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................TGAGTCGTGGTGGCTGCTGGTGG....................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................TGAGTCGTGGTGGCTGCTGGTGGCgtc................................................................................................................... 27 gtc 1.00 6.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................TTCATTCCCATGAGTCGTGGTGGCTGCT............................................................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................TTCATTCCCATGAGTCGTGGTGGCTG.............................................................................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........TGGACGTCTACGGCCTCACGCGGGGT..................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................TGGCTTCTTTCTGGTCCGTTAGTTGC......................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...............................................................................................................................................................................................TGTTCCTGGCCACAGCTTTGGCAAGTGG............................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................TTCTGGTCCGTTAGTTGCAGGTGCT.................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................TAACCTTCATTCCCATGAGTCGTGGTGG................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................TTCTGGTCCGTTAGTTGCAGGTGC................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TCCCGTGAACAGCAGTGTCC........................................................... 20 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TCCCATGAGTCGTGGTGGCTGCTcgtg........................................................................................................................ 27 cgtg 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................TATTGAGATTATAACCCACACAGGCCCc 28 c 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................AGCTTTGGCAAGTGGGGCTTATTGAG.................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................TTTCTGGTCCGTTAGTTGCAGGTGCTG................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................TCATTCCCATGAGTCGTGGTGGCTGCTGa.......................................................................................................................... 29 a 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TCCCATGAGTCGTGGTGGCTGCTGGTG........................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................TTCACAACTTTCCCGTGAACAGCAGTG.............................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
............................................TGCTAGGTGAGTGGCTTCTTTCTGGTCC.................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........TGGTGGACGTCTACGGCCTCACGCGGG....................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........TGGTGGACGTCTACGGCCTCACGCGGt....................................................................................................................................................................................................................... 27 t 1.00 3.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................TAGGTGAGTGGCTTCTTTCTGGTCCGT................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
............................................TGCTAGGTGAGTGGCTTCTTTCTGG..................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........GTGGACGTCTACGGCCTCACGCGGGGg..................................................................................................................................................................................................................... 27 g 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................TGGTGGCATCCATAAAACTAGGGGC.................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................GTGGCTTCTTTCTGGcaaa................................................................................................................................................................................. 19 caaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...........................................................................................................................................................................................................CAGCTTTGGCAAGTGGGGCTTATTG...................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................TGAGTGGCTTCTTTCTGGTCCGTTAG............................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................TATTGAGATTATAACCCACACAGG... 24 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TAAAACTAGGGGCCCAGGAACAACTTCAC.................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.....................................................................................................................................................................................................TGGCCACAGCTTTGGCAAGTGGGGC............................ 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................TGAGTCGTGGTGGCTGCTGGgggg...................................................................................................................... 24 gggg 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.............................................................................................TAACCTTCATTCCCATGAGTCGTGGT................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TTCTTTCTGGTCCGTTAGTTGCAGG...................................................................................................................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........TGGACGTCTACGGCCTCACGCGGGGTG.................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..................................................................TGGTCCGTTAGTTGCAGGTGCTGG................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
............................................................................................................TGAGTCGTGGTGGCTGCTGGTGGa...................................................................................................................... 24 a 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................TGGTGGCTGCTGGTGG....................................................................................................................... 16 16 0.06 0.06 - - - - - - - - - - - - - - - 0.06 - - - - - - - - - - - -

Antisense strand
CTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAGGTGAGTGGCTTCTTTCTGGTCCGTTAGTTGCAGGTGCTGGGACTAACCTTCATTCCCATGAGTCGTGGTGGCTGCTGGTGGCATCCATAAAACTAGGGGCCCAGGAACAACTTCACAACTTTCCCGTGAACAGCAGTGTCCTGTTCCTGGCCACAGCTTTGGCAAGTGGGGCTTATTGAGATTATAACCCACACAGGCCC
.....................................................................((((((((((.(((...))).)))))))........(((((...))))).((((.(((((............))))).))))..)))..............................................................................................
.....................................................................70...............................................................................................167.................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
............................................................................................CCTTCATTCCCATGaagc............................................................................................................................................ 18 aagc 2.00 0.00 - - - - - - - - - - - - - - - - - - - - 2.00 - - - - - - -
.......................................................TGGCTTCTTTCTGGTCCGTTAGTTGCA........................................................................................................................................................................ 27 1 2.00 2.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - 1.00
......................GGCCTCACGCGGGGTGTCCAGCTGCTA......................................................................................................................................................................................................... 27 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................ACTAACCTTCATTCCCATGAGTCGTGG.................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................CAGCTGCTAGGTGAGccgc................................................................................................................................................................................................... 19 ccgc 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
................................................AGGTGAGTGGCTTCTTTCTGGTCCGTTA.............................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
....................ACGGCCTCACGCGGGGTGTCCAGCTGCTA......................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TGTCCTGTTCCTGGCCACAGCTTTGGCA.................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -