| Gene: Hif1an | ID: uc008hpy.1_intron_4_0_chr19_44644001_f | SPECIES: mm9 |
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(6) OTHER.mut |
(4) PIWI.ip |
(3) PIWI.mut |
(30) TESTES |
| TATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTGGTGAGGAGGAGAGGGACGAGGGTCTCTCGAAACACTTCCTGTCCTGTTCCCAGAAAGCTTTGCCCGAGTCCCTTTTCAGTTGAGGCAGGAAGATGAGCATGTCCAGACTGAGCACACTGAGCATAGAGGGCAGCTCTCTCTTAAAAGGAAGACGTTTCCTCAAATCCAAAGAGATCTGAGGTCCCTGTACTACCCCTTCATTATTTGGAGACCAAATGCCACAGCCCCTAGCCCCCTGTATGTTTCACAGAATGAGCATAAAGCACCTGTCTTCACTCTTTCCTTTAACTGGACTGTATGAGTTTTCATCCTTGTCTCTGGAAAGTAAACAGGAGCCCCCCCCCCCCCCGCCTCCTATTATTTTTCTTTTTCTTTTTAATAGGTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGA ....................................................................................................................................................................................................................................................................................................................................................((((...(((......)))....))))..(((((((((..((((((.............)).)))).))))))))).................................................................. ............................................................................................................................................................................................................................................................................................................................................333................................................................................................432................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................CCAAAGAGATCTGAGGTCCCTGTACTACCCCTTCATTATTTGGAGACCAAAT....................................................................................................................................................................................................................... | 52 | 1 | 37.00 | 37.00 | 37.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 23.00 | 23.00 | - | 1.00 | 1.00 | 7.00 | - | 2.00 | 1.00 | 3.00 | 1.00 | 4.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..TGAGACAGTGGTTGGCCCTGGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 5.00 | 5.00 | - | - | - | - | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .ATGAGACAGTGGTTGGCCCTGGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 4.00 | 4.00 | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 4.00 | 4.00 | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAGTCATTACTAAATGGGGGAAT.............. | 27 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................TGAGCACACTGAGCATAGAGGGCAGC.......................................................................................................................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 3.00 | 3.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGGGGGAATTACCATCACTGTG. | 26 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAGTCATTACTAAATGGGGGA................ | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................TGAGCACACTGAGCATAGAGGGC............................................................................................................................................................................................................................................................................................................. | 23 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAGTCATTACTAAATGGGGGAA............... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGATGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGATa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | a | 2.00 | 4.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................TCTTTACATCCCAATGTACTGGTGgc........................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | gc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .ATGAGACAGTGGTTGGCCCTGGGGATGTTCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 32 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACCATATAGAGTCATTACTAAATGGG................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .....................................................................................................................................................TGTCCAGACTGAGCACACTGAGCATAGAGt............................................................................................................................................................................................................................................................................................................... | 30 | t | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGtaaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | taaa | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGctg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | ctg | 1.00 | 3.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAATGGGGGAATTACCATCACT.... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................ATGAGCATGTCCAGACTGAGCACACTGAGCAT.................................................................................................................................................................................................................................................................................................................... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGATc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | c | 1.00 | 4.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGgta...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | gta | 1.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TGTCCAGACTGAGCACACT.......................................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGgtg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | gtg | 1.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGGGATtt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | tt | 1.00 | 4.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................TTTACATCCCAATGTACTGGTGgcac......................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | gcac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGGGGGAATTACCATCA...... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAGTCATTACTAAATGGGGGgat.............. | 27 | gat | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACTAAATGGGGGAATTACCATC....... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................CAGACTGAGCACACTGAGCATAGAG................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGAGACAGTGGTTGGCCCTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAGTCATTACTAAATGGGGGtat.............. | 27 | tat | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTAAATGGGGGAATTACCATCA...... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..........................................................................................................................TTTTCAGTTGAGGCAGGAtga................................................................................................................................................................................................................................................................................................................................................... | 21 | tga | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTGGTGAGGAGGAGAGGGACGAGGGTCTCTCGAAACACTTCCTGTCCTGTTCCCAGAAAGCTTTGCCCGAGTCCCTTTTCAGTTGAGGCAGGAAGATGAGCATGTCCAGACTGAGCACACTGAGCATAGAGGGCAGCTCTCTCTTAAAAGGAAGACGTTTCCTCAAATCCAAAGAGATCTGAGGTCCCTGTACTACCCCTTCATTATTTGGAGACCAAATGCCACAGCCCCTAGCCCCCTGTATGTTTCACAGAATGAGCATAAAGCACCTGTCTTCACTCTTTCCTTTAACTGGACTGTATGAGTTTTCATCCTTGTCTCTGGAAAGTAAACAGGAGCCCCCCCCCCCCCCGCCTCCTATTATTTTTCTTTTTCTTTTTAATAGGTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGA ....................................................................................................................................................................................................................................................................................................................................................((((...(((......)))....))))..(((((((((..((((((.............)).)))).))))))))).................................................................. ............................................................................................................................................................................................................................................................................................................................................333................................................................................................432................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCGCCTCCTAtgac........................................................................... | 18 | tgac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCCCCGCCTCagc.............................................................................. | 17 | agc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................................................AGATGAGCATGTCCAagg....................................................................................................................................................................................................................................................................................................................................... | 18 | agg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................CCCGAGTCCCTTTTCAaata.................................................................................................................................................................................................................................................................................................................................................................. | 20 | aata | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................TGGGGATGTTCTTTACtggc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 20 | tggc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |