| Gene: Scd2 | ID: uc008hpp.1_intron_4_0_chr19_44375935_f.3p | SPECIES: mm9 |
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(3) OTHER.mut |
(4) PIWI.ip |
(1) PIWI.mut |
(19) TESTES |
| GATGTGTAGGTCCCAGAGTATAAATGGAACTGCAATGCCTTTGGTGGTGTCTGTCTGTTCCGAGTAAATGAAACTGGGTTTAGCCATTCACTCACCTGCAGCCCTGATTCCCCTAAGTCTGAGGAGCCCACTGGGTAAGAGGCGTGGGCAGAGGAGGAAGCACTGAGCCCCCTCTCTGTTCTCCTTGCTTCTATTTGCAGGCGAGGGCTTCCACAACTACCACCACGCCTTCCCCTACGACTACTCTGCC ..............................................(((..((.(((..((.(((.......))).))..))).))..)))....((((.(((((......(((.......))).((((...)))).)).)))))))....................................................................................................... ..............................................47..................................................................................................147..................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................TAAGTCTGAGGAGCCCACTGGGTAAGAGGC........................................................................................................... | 30 | 1 | 20.00 | 20.00 | 5.00 | 3.00 | - | - | 6.00 | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .................................................................................................................TAAGTCTGAGGAGCCCACTGGGTAAGAGG............................................................................................................ | 29 | 1 | 5.00 | 5.00 | - | 1.00 | - | - | - | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TACCACCACGCCTTCCCCTACGACT........ | 25 | 1 | 4.00 | 4.00 | - | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................TTCCCCTACGACTACTCTGC. | 20 | 2 | 3.50 | 3.50 | - | - | - | - | - | - | - | - | 3.50 | - | - | - | - | - | - | - | - | - | - |
| ....................TAAATGGAACTGCAATGCCTTTGGTGG........................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TAAATGGAACTGCAATGCCTTTGGTGGT.......................................................................................................................................................................................................... | 28 | 1 | 3.00 | 3.00 | 1.00 | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TAAGTCTGAGGAGCCCACTGGGTAAGA.............................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - |
| ...................................................TGTCTGTTCCGAGTAAATGAAACTGG............................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TACCACCACGCCTTCCCCTACGACTAC...... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .................................................................................................................................................................................................TTTGCAGGCGAGGGCTTCCACAACTACC............................. | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TACCACCACGCCTTCCCCTACGACTACTC.... | 29 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TGGAACTGCAATGCCTTTGGTGGTGTC....................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| .....................AAATGGAACTGCAATGCCTTTGGTGGg.......................................................................................................................................................................................................... | 27 | g | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................CGCCTTCCCCTACGACTACTCT... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................GAGGAAGCACTGAGCCgtg.............................................................................. | 19 | gtg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................TGGAACTGCAATGCCTTTGGTGGTGTCT...................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................AGCCCTGATTCCCCTAAGTCTGAGGAGC........................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................TAGCCATTCACTCACCTGCAGCCCTGATT............................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................CTAAGTCTGAGGAGCCCACTGGGTAAGAGGC........................................................................................................... | 31 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................CTACCACCACGCCTTCCCCTACGA.......... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................TGAAACTGGGTTTAGCCATT.................................................................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TAAGTCTGAGGAGCCCACTGGGTAAt............................................................................................................... | 26 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TCTGTTCCGAGTAAATGAAACTGGGTT.......................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................................................................................AGTCTGAGGAGCCCACTGGGTAAGAGGC........................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TAAGTCTGAGGAGCCCACTGGGTAAGAG............................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................AGAGGAGGAAGCACTGAGCCCC............................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..................TATAAATGGAACTGCAATGCCTTTGG.............................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TACCACCACGCCTTCCCCTACGACTA....... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TAAGTCTGAGGAGCCCACTGGGTAAG............................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............GAGTATAAATGGAACTGCAATGCCTTTG............................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TACCACCACGCCTTCCCCTACGAC......... | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TGGAACTGCAATGCCTTTGGTGGTGT........................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................GCGAGGGCTTCCACAACTACCACCACGCC..................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TAAGTCTGAGGAGCCCACTGGGTAAGAGGCGT......................................................................................................... | 32 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................GAAACTGGGTTTAGCC..................................................................................................................................................................... | 16 | 13 | 0.08 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GATGTGTAGGTCCCAGAGTATAAATGGAACTGCAATGCCTTTGGTGGTGTCTGTCTGTTCCGAGTAAATGAAACTGGGTTTAGCCATTCACTCACCTGCAGCCCTGATTCCCCTAAGTCTGAGGAGCCCACTGGGTAAGAGGCGTGGGCAGAGGAGGAAGCACTGAGCCCCCTCTCTGTTCTCCTTGCTTCTATTTGCAGGCGAGGGCTTCCACAACTACCACCACGCCTTCCCCTACGACTACTCTGCC ..............................................(((..((.(((..((.(((.......))).))..))).))..)))....((((.(((((......(((.......))).((((...)))).)).)))))))....................................................................................................... ..............................................47..................................................................................................147..................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
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| .........................................................................................................TTCCCCTAAGTCTGct................................................................................................................................. | 16 | ct | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |