| Gene: AV312086 | ID: uc008gth.1_intron_6_0_chr19_11997967_f | SPECIES: mm9 |
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(9) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(2) PIWI.mut |
(1) TDRD1.ip |
(29) TESTES |
| CTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAGGTAAGCCTACAGTTTGCTGAACCCATAAAGAATCCTGCTGTCCTAAGAGTCATTGCTTGACACCCTTTTCTTTCGCTGTTAGCCACTTGTCCCCCTGCCCCCTTTTTGTTTTCTCAAGTGAAGTTATTAATGGAAACTGCTTGCTTTTTGGTGGTGCATGCCTATGTTCCCAACACGTAGGAGGCTGAGTTAGGATTATACATGTGAGGCCATCCTGGGCTGTACAGGGAGTTCCCAAACATAAAGAGACCCTGTCACAAAGGTGGGTGAAGCCGGTGACGATTGCTAGTTCTTCTGTGTCAACGATCTTCTCCGTCTTTGCAGCTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTT .............................................................................................................................................................................................................................................................................................................(((...(((((..(((.((((.((.(((((.....(((.....)))))))).))..)))))))..)))))))).................................................. ............................................................................................................................................................................................................................................................................................................301......................................................................374................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037898(GSM510434) ovary_rep3. (ovary) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR014237(GSM319961) 10 dpp MILI-KO total. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................................................................................................................................................................................................AACGATCTTCTCCGTCTTTGC.................................................... | 21 | 1 | 16.00 | 16.00 | 12.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CACAAAGGTGGGTGAAGCCGGTGA............................................................................................... | 24 | 1 | 6.00 | 6.00 | - | - | - | 1.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................ACAAAGGTGGGTGAAGCCGGTGt............................................................................................... | 23 | t | 3.00 | 2.00 | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................AACGATCTTCTCCGTCTTTGCA................................................... | 22 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ....TGTACTTAGTCCCCTGCAGAGAGCACA......................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................AACGATCTTCTCCGTCTTTGCAGt................................................. | 24 | t | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CACAAAGGTGGGTGAAGCCGGTGt............................................................................................... | 24 | t | 3.00 | 1.00 | - | 1.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................ACGATCTTCTCCGTgatg...................................................... | 18 | gatg | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................ACAAAGGTGGGTGAAGCCGGTGA............................................................................................... | 23 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................ACAAAGGTGGGTGAAGCCGGTagg.............................................................................................. | 24 | agg | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................AACGATCTTCTCCGTCTTTGCAG.................................................. | 23 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................ACAAAGGTGGGTGAAGCCGGTGAC.............................................................................................. | 24 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................ACAAAGGTGGGTGAAGCCGGTG................................................................................................ | 22 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................CAAAGGTGGGTGAAGCCGGTGAtt............................................................................................. | 24 | tt | 2.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................TCACAAAGGTGGGTGAAGCCGGTG................................................................................................ | 24 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................CAACGATCTTCTCCGTCTTTG..................................................... | 21 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................CAACGATCTTCTCCGTCTTTGC.................................................... | 22 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................TCACAAAGGTGGGTGAAGCCGGTGA............................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....TGTACTTAGTCCCCTGCAGAGAGCACAtt....................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | tt | 1.00 | 3.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................GTGAAGCCGGTGACGATTGCT....................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................ATCTTCTCCGTCTTTGCAGttt............................................... | 22 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................TCACAAAGGTGGGTGAAGCCGGTat............................................................................................... | 25 | at | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................TCACAAAGGTGGGTGAAGCCGGTGg............................................................................................... | 25 | g | 1.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................CAAAGGTGGGTGAAGCCGGTGA............................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................GATCTTCTCCGTCTTTGCAG.................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................AAAGGTGGGTGAAGCCGGTGA............................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CACAAAGGTGGGTGAAGCCGGTat............................................................................................... | 24 | at | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................AACGATCTTCTCCGTCTTTGCAGa................................................. | 24 | a | 1.00 | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....TGTACTTAGTCCCCTGCAGAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CACAAAGGTGGGTGAAGCCGGTact.............................................................................................. | 25 | act | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................TCACAAAGGTGGGTGAAGCCGGat................................................................................................ | 24 | at | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................ACAAAGGTGGGTGAAGCCGGTa................................................................................................ | 22 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................CAACGATCTTCTCCGTCTTTGtt................................................... | 23 | tt | 1.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CACAAAGGTGGGTGAAGCCGGTG................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TACTTAGTCCCCTGCAGAGAGCACAGCTT..................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TACTTAGTCCCCTGCAGAGAGCACAGCT...................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CACAAAGGTGGGTGAAGCCGGTGAC.............................................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................ACAGCCTGGACGAATGTCTCCCA......................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................TCACAAAGGTGGGTGAAGCCGGTGAt.............................................................................................. | 26 | t | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................AACGATCTTCTCCGTCTTTG..................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................CACAAAGGTGGGTGAAGCCGGTaa............................................................................................... | 24 | aa | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................AACGATCTTCTCCGTCTTTGCAt.................................................. | 23 | t | 1.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAGGTAAGCCTACAGTTTGCTGAACCCATAAAGAATCCTGCTGTCCTAAGAGTCATTGCTTGACACCCTTTTCTTTCGCTGTTAGCCACTTGTCCCCCTGCCCCCTTTTTGTTTTCTCAAGTGAAGTTATTAATGGAAACTGCTTGCTTTTTGGTGGTGCATGCCTATGTTCCCAACACGTAGGAGGCTGAGTTAGGATTATACATGTGAGGCCATCCTGGGCTGTACAGGGAGTTCCCAAACATAAAGAGACCCTGTCACAAAGGTGGGTGAAGCCGGTGACGATTGCTAGTTCTTCTGTGTCAACGATCTTCTCCGTCTTTGCAGCTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTT .............................................................................................................................................................................................................................................................................................................(((...(((((..(((.((((.((.(((((.....(((.....)))))))).))..)))))))..)))))))).................................................. ............................................................................................................................................................................................................................................................................................................301......................................................................374................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037898(GSM510434) ovary_rep3. (ovary) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR014237(GSM319961) 10 dpp MILI-KO total. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................................CTGAGTTAGGATTATtct............................................................................................................................................................................... | 18 | tct | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................TGCAGCTACAGCCTcacg......................................... | 18 | cacg | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................GCCACTTGTCCCCCT...................................................................................................................................................................................................................................................................................... | 15 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - |
| .................................................................................................................................GCCACTTGTCCCCCTgt...................................................................................................................................................................................................................................................................................... | 17 | gt | 0.14 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |