(9)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(3)
PIWI.mut
(40)
TESTES

Sense strand
TGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAGGTGAGGAGCTGTTGGGATAAGAGGGAGGTGAGAGAATGTTGCCCCTAAAGGCAAGTGAGGTGGTAAAGGGGCCACGGACCTCACAGCCGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTCTGGAGAGACCTTACTGTCCATGCAGATTCCTTCCCACTAACCTCCTCTCTTCCTCTTCAGGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCT
.........................................................(((.(((((..........(((((.......)))))))))).)))..............(((.(((((((((..(((((.((..((..((....))..))..)).))))).))))))).)).)))...................................................................................................................
..................................................51......................................................................................................................................187............................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR037900(GSM510436)
testes_rep1. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
......TCTTGAACGAGACAGACATCTTAAACC........................................................................................................................................................................................................................................................................ 27 1 18.00 18.00 4.00 5.00 - 2.00 2.00 - - - - 1.00 - - 1.00 - - - - 1.00 - - - 1.00 - - - - - - - - - - - - 1.00 - - - - - -
..................................................GTGAGGAGCTGTTGGGATAAGAGGGA............................................................................................................................................................................................................................. 26 1 13.00 13.00 - - 3.00 - - 1.00 - 2.00 1.00 1.00 - 1.00 1.00 - - - - - 2.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
......TCTTGAACGAGACAGACATCTTAAACCAGT..................................................................................................................................................................................................................................................................... 30 1 8.00 8.00 - - - - - - 3.00 - - - - 1.00 - - - - - - - 1.00 - - 1.00 - - 1.00 - - - - - - - - - - - 1.00 - - -
.............................................................................................................................................................................................................................................................................TGTTTGATCCTGTGCAGAAGACACTTCT 28 1 6.00 6.00 1.00 1.00 - 3.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......TCTTGAACGAGACAGACATCTTAAACCA....................................................................................................................................................................................................................................................................... 28 1 6.00 6.00 2.00 1.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..................................................GTGAGGAGCTGTTGGGATAAGAGGG.............................................................................................................................................................................................................................. 25 1 6.00 6.00 1.00 - 2.00 - - 2.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........TGAACGAGACAGACATCTTAAACCAGTA.................................................................................................................................................................................................................................................................... 28 1 5.00 5.00 - 1.00 - 1.00 - - - 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGGAGCTGTTGGGATAAGAGG............................................................................................................................................................................................................................... 24 1 4.00 4.00 - - 2.00 - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAACGAGACAGACATCTTAAACCAGT..................................................................................................................................................................................................................................................................... 27 1 4.00 4.00 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..............GAGACAGACATCTTAAAC......................................................................................................................................................................................................................................................................... 18 1 4.00 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - 1.00 - - 1.00 - - - - - 1.00 -
......TCTTGAACGAGACAGACATCTTAAAC......................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......CTTGAACGAGACAGACATCTTAAACCA....................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAACGAGACAGACATCTTAAACCAGTAT................................................................................................................................................................................................................................................................... 29 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TGGTGTTTGATCCTGTGCAGAA......... 22 1 2.00 2.00 - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................TGTTTGATCCTGTGCAGAAGACACTTCTt 29 t 2.00 6.00 - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................TGTTTGATCCTGTGCAGAAGACACTTCTgt 30 gt 2.00 6.00 - - - - - - - - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........AACGAGACAGACATCTTAAACCAGTAT................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................TGTTTGATCCTGTGCAGAAGACACTT.. 26 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........TTGAACGAGACAGACATCTTAAACC........................................................................................................................................................................................................................................................................ 25 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..ACTCTCTTGAACGAGACAGACATCTTAA........................................................................................................................................................................................................................................................................... 28 1 2.00 2.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.......CTTGAACGAGACAGACATCTTAAACCAGT..................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAACGAGACAGACATCTTAAACCta...................................................................................................................................................................................................................................................................... 26 ta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................TGAGGAGCTGTTGGGATAAGAGGGA............................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........TTGAACGAGACAGACATCTTAAACCAG...................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGGAGCTGTTGGGATAAGAGGa.............................................................................................................................................................................................................................. 25 a 1.00 4.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................TTTTACTCACTGGTGTTTGATCCTGTtc............. 28 tc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................TACTCACTGGTGTTTGATCCTGTGCAGAAGA....... 31 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........AACGAGACAGACATCTTAAACCAG...................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................TAAAGGCAAGTGAGGTGGTAAAGGGGa............................................................................................................................................................................... 27 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...........AACGAGACAGACATCTTAAACCAGTATC.................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................TTTTTACTCACTGGTGTTTGATCCTGTGC............. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...............................................................................................................................................................................................................................................................TTTTTACTCACTGGTGTTTGATCCTG................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........TGAACGAGACAGACATCTTAAACCAGca.................................................................................................................................................................................................................................................................... 28 ca 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAACGAGACAGACATt............................................................................................................................................................................................................................................................................... 17 t 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................TGTTTGATCCTGTGCAGAAGACACTTC. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........TTGAACGAGACAGACATCTTAAACCAGT..................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......TCTTGAACGAGACAGACATC............................................................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........TTGAACGAGACAGACATCTTAAACCAGTA.................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........AACGAGACAGACATCTTAAACCAGTA.................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................CATCTTAAACCAGTATCTAGACAAGGAGGa..................................................................................................................................................................................................................................................... 30 a 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................TTTTACTCACTGGTGTTTGATCCTttgc............. 28 ttgc 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................ACATCTTAAACCAGTATt.................................................................................................................................................................................................................................................................. 18 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................GTGAGGAGCTGTTGGGATAAGAGGGAG............................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................TTTTTACTCACTGGTGTTTGATCCT................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......CTTGAACGAGACAGACATCTTAAACC........................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TGTGTCTGTGTGTCTGTGTGTGgtga.................................................................................................................. 26 gtga 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAACGAGACAGACATCTTtttt......................................................................................................................................................................................................................................................................... 23 tttt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................TTTGATCCTGTGCAGAAGACACT... 23 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................TTTTTACTCACTGGTGTTTGATCCTGT............... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
........................................................................................................................................................................GTCTGTGTGTGTCTGTGTCTGGA.......................................................................................................... 23 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -

Antisense strand
TGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAGGTGAGGAGCTGTTGGGATAAGAGGGAGGTGAGAGAATGTTGCCCCTAAAGGCAAGTGAGGTGGTAAAGGGGCCACGGACCTCACAGCCGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTCTGGAGAGACCTTACTGTCCATGCAGATTCCTTCCCACTAACCTCCTCTCTTCCTCTTCAGGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCT
.........................................................(((.(((((..........(((((.......)))))))))).)))..............(((.(((((((((..(((((.((..((..((....))..))..)).))))).))))))).)).)))...................................................................................................................
..................................................51......................................................................................................................................187............................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR037900(GSM510436)
testes_rep1. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
...................................................................................................................................................GTGTGTGTGTGTCTGTGTGTCTGTgac........................................................................................................................... 27 gac 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................TGTGTCTGGAGAGACCTTAcgag................................................................................................. 23 cgag 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGTGTCTGGAGAGACCTTAcga................................................................................................. 22 cga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -