(8)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(3)
PIWI.mut
(29)
TESTES

Sense strand
CAACCGATCTCAATGGGGCGCACTTCGACCCGGAAGTTTATCTTGACAAGGTGTGTGTGTGAAATGGGGCGGGTCCAGACCCCAAATATCTTGGACCCTAGATCTTACTCCCGATTTGGTTGCTGTGGTGACGGCAGCGGGGTTTATAAGAGGACAGCCCTTACTAGGCAATAGAGGCAGATCTGGAGGCCAAGGGAGCCTGGGCCTGACTTGAGGTCACACTGGGTCTGAGGTCTCGGTGCTGGCTCGTGGTAGTGGGTGTGACCATGCTCTTGACAGGCGCTAGGCAGGGCCTAGGTTGACTTTAAACTAAGCCAGAAGACCATGAACGCTGACAAATCCCAAATTGGGTCTAACCTGTGAAGTGTGCTACTTAAAGTGTGCCACTTATGGAATTCCTGATAAGGGTGGGATTGGAGTTGTCTTGCACTGAAATCCAACTAACGTAAAGCAGGGTAGCAGGACGTGAGTGAGCACTAACGCTGACTGTTCCTACCTGCTTCTCTAGCTGCGTAGAGAATGTCCTCTGGCCCAGCTGATGGACAGTGAGACGGACAT
............................................................................................................................................................(((.......)))......((....(((((.((((.(((...))).))))....(((((((((..((((((((...((((.((((((...(((.((((.(((......)))))))..)))..)))))))))).))))))))..)))))))))......)))))...))..........................................................................................................................................................................................................................................
............................................................................................................................................................157................................................................................................................................................................................336............................................................................................................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
.................................................................................................................................................................................................................................................................................................................TAAACTAAGCCAGAAGACCATGAACGC.................................................................................................................................................................................................................................. 27 1 7.00 7.00 4.00 - 1.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
......................................................................................TATCTTGGACCCTAGATCTTACTCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 7.00 7.00 - 7.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................TACTAGGCAATAGAGGCAGATCTGGAG.................................................................................................................................................................................................................................................................................................................................................................................. 27 1 3.00 3.00 1.00 - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................TTAAACTAAGCCAGAAGACCATGAACGC.................................................................................................................................................................................................................................. 28 1 3.00 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATGTCCTCTGGCCCAGCTGATGt................ 27 t 3.00 0.00 - - - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TGAGGTCTCGGTGCTGGCTCGTGG.................................................................................................................................................................................................................................................................................................................. 24 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTCCTGATAAGGGTG.................................................................................................................................................... 20 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................TAAACTAAGCCAGAAGACCATGAACGCT................................................................................................................................................................................................................................. 28 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.................................................................................................................................................................................................................................................................................................................TAAACTAAGCCAGAAGACCATGAACGCTGA............................................................................................................................................................................................................................... 30 1 2.00 2.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - 1.00 - -
........................................................................................................................................................................................................................................................................................................................................................................TGAAGTGTGCTACTTAAAGTGTccat............................................................................................................................................................................ 26 ccat 2.00 0.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
........................................................................................TCTTGGACCCTAGATCTTACTCCCGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAGTGAGACGGACA. 18 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................AACTAAGCCAGAAGACCATGAACGCTG................................................................................................................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................GACTTGAGGTCACACTGGGTCTGAGGT.................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCAGGGTAGCAGGACGTGAGT....................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAGTGAGACGGACAT 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..................................................................................................................................................................................................................................................................................................................................CCATGAACGCTGACAAATCC........................................................................................................................................................................................................................ 20 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TGAGGTCTCGGTGCTGGCTCGTG................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................TAACCTGTGAAGTGTGCTACTTAAAGT.................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
................................................................................................................................................TATAAGAGGACAGCCCTTACTAGGCAA................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TTACTAGGCAATAGAGGCAGATCTGGA................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......ATCTCAATGGGGCGCACTTCGACCCGGcagt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 31 cagt 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
........................................................GTGTGAAATGGGGCGtacg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 tacg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAATGTCCTCTGGCCCAGCTGATG................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................GTGTGAAATGGGGCGta..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 ta 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................TGAACGCTGACAAATCCCAAATTGGGcc............................................................................................................................................................................................................. 28 cc 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATCCAACTAACGTAAAGCAGG....................................................................................................... 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................ACTAGGCAATAGAGGCAGATCTGGAG.................................................................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGGACGTGAGTGAGCACTAACGC........................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGGATTGGAGTTGa....................................................................................................................................... 18 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TTACTAGGCAATAGAGGCAGATCTGGAG.................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGCGTAGAGAATGTCCTCTGG............................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
............................................................................................................................GTGGTGACGGCAGCtgct................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 tgct 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
......ATCTCAATGGGGCGCACTTCGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TGGGCCTGACTTGAGtaaa................................................................................................................................................................................................................................................................................................................................................... 19 taaa 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................TGTGAAGTGTGCTACTTAAAGTGTGCCACTT......................................................................................................................................................................... 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAATGTCCTCTGGCCCAGCTGAT.................. 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGTTGTCTTGCACTGAAATCCAAC..................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................AAGCCAGAAGACCATGAACGCTGAC.............................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
......................CTTCGACCCGGAAGTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAGTGAGACGG.... 17 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................ACAGGCGCTAGGCAGGGCCTAGGTTGA................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCCTCTGGCCCAGCTGATG................. 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................TTAAAGTGTGCCACTTATGGAATTCCTG............................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGTTCCTACCTGCTTCTCTAGC................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTCCTGATAAGGGTGGGATTGG............................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCAGCTGATGGACAGTGAGACGGA... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAATGTCCTCTGGCCCAGCTGATGt................ 28 t 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TCGACCCGGAAGTTTATCTTGACAAGctgc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 30 ctgc 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGCTGATGGACAGTGAGACGG.... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CAACCGATCTCAATGGGGCGCACTTCGACCCGGAAGTTTATCTTGACAAGGTGTGTGTGTGAAATGGGGCGGGTCCAGACCCCAAATATCTTGGACCCTAGATCTTACTCCCGATTTGGTTGCTGTGGTGACGGCAGCGGGGTTTATAAGAGGACAGCCCTTACTAGGCAATAGAGGCAGATCTGGAGGCCAAGGGAGCCTGGGCCTGACTTGAGGTCACACTGGGTCTGAGGTCTCGGTGCTGGCTCGTGGTAGTGGGTGTGACCATGCTCTTGACAGGCGCTAGGCAGGGCCTAGGTTGACTTTAAACTAAGCCAGAAGACCATGAACGCTGACAAATCCCAAATTGGGTCTAACCTGTGAAGTGTGCTACTTAAAGTGTGCCACTTATGGAATTCCTGATAAGGGTGGGATTGGAGTTGTCTTGCACTGAAATCCAACTAACGTAAAGCAGGGTAGCAGGACGTGAGTGAGCACTAACGCTGACTGTTCCTACCTGCTTCTCTAGCTGCGTAGAGAATGTCCTCTGGCCCAGCTGATGGACAGTGAGACGGACAT
............................................................................................................................................................(((.......)))......((....(((((.((((.(((...))).))))....(((((((((..((((((((...((((.((((((...(((.((((.(((......)))))))..)))..)))))))))).))))))))..)))))))))......)))))...))..........................................................................................................................................................................................................................................
............................................................................................................................................................157................................................................................................................................................................................336............................................................................................................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
.......................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTGCCACTTATGGAATTCCTGATA.......................................................................................................................................................... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................CCAAATATCTTGGACCCTAGATCTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCAACTAgagg................................................................................................................... 16 gagg 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -