(4)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(31)
TESTES

Sense strand
GACCCTTATAGATGAAGACGTGTATCGCCTCTGGCTGGATGGTTACTCAGGTCTGTGAGCCGCCCTCCCGGGAAGCTGTTGTTGGGGATCGGGAAGAGGGGGCGTGGCTAGGATTTAGGCTTGGTTTAGGGAAGTGGACAGACTGCGGGAAGTCGGGGAAGTGTAAGGATTGGAGGTGGAGGTGGAACCCCTGGAGGGCCTCTAGGGTCTTATGGTAGCGCCCACTCCTCAGTGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACG


Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT1()
Testes Data. (testes)
GSM475281(GSM475281)
total RNA. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
........TAGATGAAGACGTGTATCGCCTCTGG........................................................................................................................................................................................................................................................ 26 1 17.00 17.00 2.00 5.00 3.00 - 3.00 - 4.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....TTATAGATGAAGACGTGTATCGCCTCT.......................................................................................................................................................................................................................................................... 27 1 8.00 8.00 1.00 3.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
..................CGTGTATCGCCTCTGGCT...................................................................................................................................................................................................................................................... 18 1 7.00 7.00 - - - - - 6.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........TAGATGAAGACGTGTATCGCCTCTGGC....................................................................................................................................................................................................................................................... 27 1 5.00 5.00 1.00 1.00 1.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........TAGATGAAGACGTGTATCGCCTCTG......................................................................................................................................................................................................................................................... 25 1 4.00 4.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
........TAGATGAAGACGTGTATCGCCTCTGGCT...................................................................................................................................................................................................................................................... 28 1 4.00 4.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............TGAAGACGTGTATCGCCTCTGGCTGG.................................................................................................................................................................................................................................................... 26 1 4.00 4.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................AGGGAAGTGGACAGACTGCGGGAAGT................................................................................................................................. 26 1 3.00 3.00 - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............TGAAGACGTGTATCGCCTCTGGCTGGA................................................................................................................................................................................................................................................... 27 1 3.00 3.00 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......TATAGATGAAGACGTGTATCGCCTCT.......................................................................................................................................................................................................................................................... 26 1 3.00 3.00 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......TATAGATGAAGACGTGTATCGCCTCTG......................................................................................................................................................................................................................................................... 27 1 3.00 3.00 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....TTATAGATGAAGACGTGTATCGCCTC........................................................................................................................................................................................................................................................... 26 1 3.00 3.00 1.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................TAAGGATTGGAGGTGGAGGTGGA................................................................................................ 23 1 3.00 3.00 - - - - - - - - - - - - - 1.00 - 2.00 - - - - - - - - - - - - - - -
..............................................................................................................................TAGGGAAGTGGACAGACTGCGGGAAG.................................................................................................................................. 26 1 3.00 3.00 - - - - - - - - 1.00 - - - - - - - 2.00 - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TCAGTGAACGATGCAGTGGCTCTGC............................. 25 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - -
........TAGATGAAGACGTGTATCGCCTCTGt........................................................................................................................................................................................................................................................ 26 t 2.00 4.00 - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.................ACGTGTATCGCCTCTGGCTGGATGGTT.............................................................................................................................................................................................................................................. 27 1 2.00 2.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................TGCGAGTACGCTCCGGAATCTTGGAGt..... 27 t 2.00 0.00 - - - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - -
........TAGATGAAGACGTGTATCGCCTCTGGCTGt.................................................................................................................................................................................................................................................... 30 t 2.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - 1.00 - - - - - - - - -
...................................................................................................................................................................TAAGGATTGGAGGTGGAGGTG.................................................................................................. 21 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......ATAGATGAAGACGTGTATCGCCTCTGG........................................................................................................................................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................GTGTAAGGATTGGAGGTGGAG..................................................................................................... 21 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................AGGGTCTTATGGTAGCGC............................................................. 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........AGATGAAGACGTGTATCGCCTCTGGC....................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........AGATGAAGACGTGTATCGCCTCTGGCTGGAT.................................................................................................................................................................................................................................................. 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
........TAGATGAAGACGTGTATCGCCTCTGGt....................................................................................................................................................................................................................................................... 27 t 1.00 17.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
........TAGATGAAGACGTGTATCGCCTCTGGCTG..................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.................................GCTGGATGGTTACTCAG........................................................................................................................................................................................................................................ 17 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................GGGAAGTGTAAGGATTGGAG........................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................................................................................................................................................................................................CTCAGTGAACGATGCAGTGGCTCTGC............................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........ATGAAGACGTGTATCGCCTCTGGCTGGA................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......TATAGATGAAGACGTGTATCGCCTCTGaa....................................................................................................................................................................................................................................................... 29 aa 1.00 3.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................GTCGGGGAAGTGTAAGGA................................................................................................................. 18 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................GAAGTGTAAGGATTGGAGGTGGAGGT................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................................................GGTTTAGGGAAGTGGACAGACTGCGG...................................................................................................................................... 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................AGGATTGGAGGTGGAGGTGG................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................CGAGTACGCTCCGGAATCTTGGAGCAG... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................GTCGGGGAAGTGactc................................................................................................................... 16 actc 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............AAGACGTGTATCGCCTCTGGCTGGATGGT............................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........AGATGAAGACGTGTATCGCCTCTGGCTGGA................................................................................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.......................................................................................................................................GGACAGACTGCGGGAAGT................................................................................................................................. 18 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................CTAGGATTTAGGCTTGGTTTAGGGA...................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................GTTTAGGGAAGTGGACAGACTGCGGG..................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................GGGGAAGTGTAAGGATTGGAGG.......................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................CTCAGTGAACGATGCAGTGGCTCTGCGAGT......................... 30 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........AGATGAAGACGTGTATCGCCTCTGG........................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.............GAAGACGTGTATCGCCTCTGGCTGGATGGTT.............................................................................................................................................................................................................................................. 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
................GACGTGTATCGCCTCTGGCTGGATGGTT.............................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........TAGATGAAGACGTGTATCGCCTCT.......................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..............................................................................................................................................................AAGTGTAAGGATTGGAG........................................................................................................... 17 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............TGAAGACGTGTATCGCCTCTGGCTGGg................................................................................................................................................................................................................................................... 27 g 1.00 4.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................GGGAAGTCGGGGAAGTGTAAGG.................................................................................................................. 22 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................GTGTATCGCCTCTGGCTGGATGGTT.............................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................GTAAGGATTGGAGGTGGAGG.................................................................................................... 20 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................TGCGAGTACGCTCCGGAATCTTGGAGCAGAC. 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....TTATAGATGAAGACGTGTATCGCCTCTG......................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........AGATGAAGACGTGTATCGCCTCTGGCT...................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............TGAAGACGTGTATCGCCTCTGGCTGGAT.................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......ATAGATGAAGACGTGTATCGCCTCTGGCTG..................................................................................................................................................................................................................................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................GTAAGGATTGGAGGTGGA...................................................................................................... 18 2 0.50 0.50 - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................GATTGGAGGTGGAGGTGGA................................................................................................ 19 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.50

Antisense strand
GACCCTTATAGATGAAGACGTGTATCGCCTCTGGCTGGATGGTTACTCAGGTCTGTGAGCCGCCCTCCCGGGAAGCTGTTGTTGGGGATCGGGAAGAGGGGGCGTGGCTAGGATTTAGGCTTGGTTTAGGGAAGTGGACAGACTGCGGGAAGTCGGGGAAGTGTAAGGATTGGAGGTGGAGGTGGAACCCCTGGAGGGCCTCTAGGGTCTTATGGTAGCGCCCACTCCTCAGTGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACG


Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT1()
Testes Data. (testes)
GSM475281(GSM475281)
total RNA. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)