| Gene: B3gnt1 | ID: uc008gbx.1_intron_0_0_chr19_5040033_f | SPECIES: mm9 |
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(4) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(20) TESTES |
| CCACATTTGACGAACGCTTTCGGCAGTATGGTTTCAATCGAATCAGCCAGGTACTTAAAAGGGAGAGGGCATGTAGGACTAAGACTGGAGGCGTGTCAGGGGTGAAGTGGCCATTGGTGGAAAGGAGGCAGTGAAGCAAGAAGAAAGTGGTTGGATGATGGAGAATTGAGGACAGTGGAGTGGAACTTTAGGGATGATCATGTGGGCCCTGGGGATATCATTAAGTTATTGTGATTAAATCACTGTGACCTCTCCCTGTCTCTCTCCCTCTCTTCCCTCTCCCCTCCTCTATCTCTCCCTCCCCCCCCCCCGCCCCTTTTCCAGGCTTGTGAGCTGCACGTGGCAGGGTTTAATTTTGAGGTGCTGAACGAAGG ..............................................((((.(((((...........(((((((....(((....)))..)))))))....((......(((..............)))......)).......))))).)))).....................(((((.....)))))........................................................................................................................................................................................ ..............................................47................................................................................................................................................193................................................................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......TGACGAACGCTTTCGGCAGTATGGTT..................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 28.00 | 28.00 | 9.00 | 2.00 | 9.00 | 1.00 | - | 4.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - |
| .......TGACGAACGCTTTCGGCAGTATGGTTT.................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 7.00 | 7.00 | 1.00 | 4.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TGACGAACGCTTTCGGCAGTATGGgt..................................................................................................................................................................................................................................................................................................................................................... | 26 | gt | 6.00 | 1.00 | 2.00 | - | 1.00 | - | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......TGACGAACGCTTTCGGCAGTATGGTTTC................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 5.00 | 5.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................GAATTGAGGACAGTGGAGTGGAACTTT......................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TGTAGGACTAAGACTGGAGG........................................................................................................................................................................................................................................................................................... | 20 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................TTGAGGACAGTGGAGTGGAACTTTAG....................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .....................................TCGAATCAGCCAGGTACTTAAAAGGGA...................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TACTTAAAAGGGAGAGGGCATGTAG.......................................................................................................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................TGGAGAATTGAGGACAGTGGAGTGG............................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TGACGAACGCTTTCGGCAGTATGGT...................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TAATTTTGAGGTGCTGAACGAAGGgtt | 27 | gtt | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TGTAGGACTAAGACTGGAGGCGTGaa..................................................................................................................................................................................................................................................................................... | 26 | aa | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TTGGATGATGGAGAATTGAGGACAGTG..................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................GACAGTGGAGTGGAACTTTAGGGA.................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................TGAGCTGCACGTGGCAGGGTTTAAT.................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................ATCGAATCAGCCAGGTACTTAAAAGGG....................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......TTGACGAACGCTTTCGGCAGTATGGT...................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................TGAGGACAGTGGAGTGGAACTTTAGG...................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................AGTGGAACTTTAGGGATGATCATGTG.......................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................AGCAAGAAGAAAGTGGTTGGATGATG...................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................GGGTTTAATTTTGAGGTGCTGAACGAAG. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................TTGAGGACAGTGGAGTGGAACTTTAGGG..................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................GTGGTTGGATGATGGAGAAa................................................................................................................................................................................................................ | 20 | a | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TGACGAACGCTTTCGGCAGTATtgtt..................................................................................................................................................................................................................................................................................................................................................... | 26 | tgtt | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TTGGTGGAAAGGAGGCAGTGAAGCAA........................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TAAGACTGGAGGCGTGTCAGGGtga.............................................................................................................................................................................................................................................................................. | 25 | tga | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................TGTGAGCTGCACGTGGCAGGGTTTA...................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................TTGTGATTAAATCACTGTGACCTCTCC....................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .......................................................TAAAAGGGAGAGGGCATGTAGGAC....................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TAAGACTGGAGGCGTGTCAGGGGT............................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TAAGACTGGAGGCGTGTCAGGGGTGAAGT.......................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....TTTGACGAACGCTTTCGGCAGTATGGT...................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................TCCAGGCTTGTGAGCTGCACGTGGCA............................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................TCAGCCAGGTACTTAAAAGGGAGAGGGC................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................GGTTTAATTTTGAGGTGCTGAACGAA.. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................TAGGACTAAGACTGGAGGCGTGTCA.................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TGTAGGACTAAGACTGGAGGCGTGTCA.................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................CATGTAGGACTAAGACTGGAGGCGTGT...................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TAAGACTGGAGGCGTGTCAGGGGTG.............................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TGTAGGACTAAGACTGGAGGCGTGTC..................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TAATTTTGAGGTGCTGAACGAAGGctt | 27 | ctt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................TTCCAGGCTTGTGAGCTGCACGTGGC.............................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TAAGACTGGAGGCGTGTCAGGGGTGA............................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TGACGAACGCTTTCGGCAGTATGG....................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................TGGTGGAAAGGAGGCAGTGAAGCAAGA......................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................................................TAAAAGGGAGAGGGCATGTAGGACTA..................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................GAAGAAAGTGGTTGGATGATGGAGA.................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................AGAGGGCATGTAGGACTAAGACTGG.............................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........GACGAACGCTTTCGGCAGTATGGTTT.................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................GATGATGGAGAATTGAGGACAGTGG.................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TAAGACTGGAGGCGTGTCAGGGGTGAA............................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....TTTGACGAACGCTTTCGGCAGTATGG....................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................AGTGGAACTTTAGGG..................................................................................................................................................................................... | 15 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| CCACATTTGACGAACGCTTTCGGCAGTATGGTTTCAATCGAATCAGCCAGGTACTTAAAAGGGAGAGGGCATGTAGGACTAAGACTGGAGGCGTGTCAGGGGTGAAGTGGCCATTGGTGGAAAGGAGGCAGTGAAGCAAGAAGAAAGTGGTTGGATGATGGAGAATTGAGGACAGTGGAGTGGAACTTTAGGGATGATCATGTGGGCCCTGGGGATATCATTAAGTTATTGTGATTAAATCACTGTGACCTCTCCCTGTCTCTCTCCCTCTCTTCCCTCTCCCCTCCTCTATCTCTCCCTCCCCCCCCCCCGCCCCTTTTCCAGGCTTGTGAGCTGCACGTGGCAGGGTTTAATTTTGAGGTGCTGAACGAAGG ..............................................((((.(((((...........(((((((....(((....)))..)))))))....((......(((..............)))......)).......))))).)))).....................(((((.....)))))........................................................................................................................................................................................ ..............................................47................................................................................................................................................193................................................................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................................................................TCTCCCCTCCTCTATaat.................................................................................. | 18 | aat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |