| Gene: 4930503L19Rik | ID: uc008fod.1_intron_4_0_chr18_70627140_r | SPECIES: mm9 |
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(1) OTHER.ip |
(4) OTHER.mut |
(3) PIWI.ip |
(1) PIWI.mut |
(1) TDRD1.ip |
(26) TESTES |
| TCAGTGTGACAATCCACTTCTCCCAGGACAATCCCAAAAGCCATTCTGTGGTAATATTTTGTTTTTAGTTTTTTATTTTAAAGCAAAGGATATGTTAAAATGTGATATACTCTGTAGAAGTTTTATGATGTAATAACACTTGTAGAATGCATATGATCTTTAGTATTTTAAAGCTGTTAAGGTCTTTATCTCTGTGTCCTTGCTTACATTATCCCACTGTCCTGATTTGATAGAGACGTGTACTTTCCCAGTGTTTTACTTCCTGTTGACTGAGGTATTTTGAGATTTCTATTTTTTTTCTTAAAGAGTGTTTTTGAAATTAGGTGACAAAATTGAGTTGCTTATCCTGAAGGCTAAGAAGAATCTCAAACAA ......................................................................................................................................(((((.((..((((((((..((((((((((........))))..))))))....((((((((((...((...............))...)))...))))))).))))).)))..)))))))...................................................................................................................... ........................................................................................................................121....................................................................................................................................256................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) |
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| .............................................................................................................................TGATGTAATAACACTTGTAGAATGCAT............................................................................................................................................................................................................................. | 27 | 1 | 7.00 | 7.00 | 1.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGATTTGATAGAGACGTGTACTTTCCCAGT......................................................................................................................... | 30 | 1 | 6.00 | 6.00 | 2.00 | - | - | 1.00 | - | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGATTTGATAGAGACGTGTACTTTCCC............................................................................................................................ | 27 | 1 | 5.00 | 5.00 | 1.00 | - | 1.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................ATAACACTTGTAGAATGCATATGATCTT..................................................................................................................................................................................................................... | 28 | 1 | 4.00 | 4.00 | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGATTTGATAGAGACGTGTACTTTCCCA........................................................................................................................... | 28 | 1 | 4.00 | 4.00 | 1.00 | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................TCCTGATTTGATAGAGACGTGTACTTTC.............................................................................................................................. | 28 | 1 | 4.00 | 4.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACACTTGTAGAATGCATATGATCTTTA................................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TGATGTAATAACACTTGTAGAATGCATAT........................................................................................................................................................................................................................... | 29 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACACTTGTAGAATGCATATGATCTTTAG.................................................................................................................................................................................................................. | 28 | 1 | 3.00 | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TATGATGTAATAACACTTGTAGAATGCAT............................................................................................................................................................................................................................. | 29 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGATTTGATAGAGACGTGTACTTTCCCt........................................................................................................................... | 28 | t | 2.00 | 5.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................TCCTGATTTGATAGAGACGTGTACTT................................................................................................................................ | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................TGATAGAGACGTGTACTTTCCCAGTGT....................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................TTACTTCCTGTTGACTGggt.................................................................................................. | 20 | ggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................GTAATAACACTTGTAGAATGCATATGATCT...................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACACTTGTAGAATGCATATGATCTTTAGTA................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................TCCTGAAGGCTAAGAAGAATCTCAAA... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................CTGTCCTGATTTGATAGAGACGTGTACTTT............................................................................................................................... | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........CAATCCACTTCTCCCAGG.......................................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................AAATGTGATATACTCTGTAGAAGTTTT......................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................TACTCTGTAGAAGTTTTATGATGTAATAAC............................................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...........................................................................................................................................................................................................................TCCTGATTTGATAGAGACGTGTACTTTCCCA........................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................TATACTCTGTAGAAGTTTTATGATGTA................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................................................................................................................................................................................................................................................................................................................................................TCCTGAAGGCTAAGAAGAATCTCAAACAA | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................TTCCTGTTGACTGAGGTATTTTGAGAT....................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................AGTTGCTTATCCTGAAGGCTAAGAAGt........... | 27 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................CTGAAGGCTAAGAAGAATCTC...... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................CAAAATTGAGTTGCTTATCCTGAAG..................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................TTTGATAGAGACGTGTACTTTCCCAGTG........................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGATTTGATAGAGACGTGTACTTTCCt............................................................................................................................ | 27 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................TGATAGAGACGTGTACTTTCCCAGT......................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................ATTTGATAGAGACGTGTACTTTCCCAGT......................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GTAGAATGCATATGATCTTTAGT................................................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TATGATGTAATAACACTTGTAGAATGCATA............................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................GAATGCATATGATCTTTAGTATTTTA........................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................TCTCTGTGTCCTTGCTTACATTATCCCA............................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ....................................................................................................................................ATAACACTTGTAGAATGCATATGATCT...................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TAGAATGCATATGATCTTTAGTATTT............................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................TGATGTAATAACACTTGTAGAATGCATATGc......................................................................................................................................................................................................................... | 31 | c | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................CTTGTAGAATGCATATGATCTTTAGT................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................ATGTAATAACACTTGTAGAATGCAT............................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................................TGATATACTCTGTAGAAGTTTTATGATGTA................................................................................................................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................ATTAGGTGACAAAAagca..................................... | 18 | agca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGATTTGATAGAGACGTGTAt.................................................................................................................................. | 21 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................................................................................GATGTAATAACACTTGTAGAATGCATA............................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................CACTTGTAGAATGCATATGATCTTTAG.................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TATGTTAAAATGTGATATAtt...................................................................................................................................................................................................................................................................... | 21 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TAACACTTGTAGAATGCATATGATCTTTAG.................................................................................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................TGTAATAACACTTGTAGAATGCATATGATCT...................................................................................................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................TGAAATTAGGTGACAAAA......................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| TCAGTGTGACAATCCACTTCTCCCAGGACAATCCCAAAAGCCATTCTGTGGTAATATTTTGTTTTTAGTTTTTTATTTTAAAGCAAAGGATATGTTAAAATGTGATATACTCTGTAGAAGTTTTATGATGTAATAACACTTGTAGAATGCATATGATCTTTAGTATTTTAAAGCTGTTAAGGTCTTTATCTCTGTGTCCTTGCTTACATTATCCCACTGTCCTGATTTGATAGAGACGTGTACTTTCCCAGTGTTTTACTTCCTGTTGACTGAGGTATTTTGAGATTTCTATTTTTTTTCTTAAAGAGTGTTTTTGAAATTAGGTGACAAAATTGAGTTGCTTATCCTGAAGGCTAAGAAGAATCTCAAACAA ......................................................................................................................................(((((.((..((((((((..((((((((((........))))..))))))....((((((((((...((...............))...)))...))))))).))))).)))..)))))))...................................................................................................................... ........................................................................................................................121....................................................................................................................................256................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) |
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