(4)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(4)
PIWI.mut
(25)
TESTES

Sense strand
TCCCTCTTAAGATGCCCTCTTTGGAACCCCCATTCCTATGGACTTAAAAGGTGTCTGACCTAGGGGACATGGCACAAAGCACAGTGGGAATGGGATCGGTGTGAAGGGCACCCAGAAGTTAGCAGGAAGTGGTGACTAGGCCTTACAGAATGCCTAGTGTGGGAGGCCACAGTGGGTGGCTCAGCAGTGCCACTCTTGTCTGCATAAAGAAGCCATCTCAAGGCCACAGCTGATTAGCTAGGGCTTGCCACAGCTCGAAGCTCATCCTACCTCTTTCCTCTCTCATGTTTAGGATGAATGTTGCTTGTGTTAGTCGCAGGCAGGGCATCTCTGAAGAAGACC
..................................................(((((((.((....)).)).)))))....((((.(((........))).)))).(((((.......(((((.((.....)).)))))..)))))......................................................................................................................................................................................................
..................................................51................................................................................................149...............................................................................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
.......................................................................................................................TAGCAGGAAGTGGTGACTAGGCCTTA..................................................................................................................................................................................................... 26 1 12.00 12.00 3.00 1.00 - 3.00 - - - 1.00 1.00 - - 1.00 1.00 - - - - - 1.00 - - - - - - -
.......................................................TGACCTAGGGGACATGGCACAAAGCAC.................................................................................................................................................................................................................................................................... 27 1 11.00 11.00 4.00 1.00 - 1.00 - - - 1.00 - - - 2.00 - - - - - - 1.00 - - - - 1.00 - -
...................................................................................................................................................................................................................................................................................................................TGTTAGTCGCAGGCAGGGCATCTCTG......... 26 1 8.00 8.00 4.00 1.00 - - - - - 1.00 - - - - - - - - - 1.00 - - - 1.00 - - - -
......................................TGGACTTAAAAGGTGTCTGACCTAGGG..................................................................................................................................................................................................................................................................................... 27 1 3.00 3.00 - - 1.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
............................................TAAAAGGTGTCTGACCTAGGGGACATGGC............................................................................................................................................................................................................................................................................. 29 1 3.00 3.00 - - - - 1.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - -
......................................TGGACTTAAAAGGTGTCTGACCTAGG...................................................................................................................................................................................................................................................................................... 26 1 3.00 3.00 - - - - - - - - - - - - - 3.00 - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................TCTCTCATGTTTAGGATGAATGTTGC...................................... 26 1 2.00 2.00 - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................TTAAAAGGTGTCTGACCTAGGGGACA................................................................................................................................................................................................................................................................................. 26 1 2.00 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................TAAAAGGTGTCTGACCTAGGGGACAT................................................................................................................................................................................................................................................................................ 26 1 2.00 2.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................TAGCAGGAAGTGGTGACTAGGCCTT...................................................................................................................................................................................................... 25 1 2.00 2.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.............................................................................AGCACAGTGGGAATGGGATCGGTGT................................................................................................................................................................................................................................................ 25 1 2.00 2.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................TAGGATGAATGTTGCTTGTGTTAGTCGC......................... 28 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................TAGCAGGAAGTGGTGACTAGGCCTTAt.................................................................................................................................................................................................... 27 t 2.00 12.00 - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................TGACCTAGGGGACATGGCACAAAGCACA................................................................................................................................................................................................................................................................... 28 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.......................................................................................................................TAGCAGGAAGTGGTGACTAGGCCTTAC.................................................................................................................................................................................................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................TGTTAGTCGCAGGCAGGGCATCTC........... 24 1 2.00 2.00 - - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................TACAGAATGCCTAGTGTGGGAGGCCACAGT......................................................................................................................................................................... 30 1 2.00 2.00 - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
......................................................CTGACCTAGGGGACATGGCACAAAGCAC.................................................................................................................................................................................................................................................................... 28 1 2.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - -
.....................................................................................................................................................................................................................................................TGCCACAGCTCGAAGCTCATCCTACCT...................................................................... 27 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - -
...................................................................................................................................................................................................................................................................................................................TGTTAGTCGCAGGCAGGGCATCTCTGA........ 27 1 2.00 2.00 - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
............................................TAAAAGGTGTCTGACCTAGGGGACA................................................................................................................................................................................................................................................................................. 25 1 2.00 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................TGACCTAGGGGACATGGCACAAAGCA..................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................TAGTCGCAGGCAGGGCATCTCTGA........ 24 1 2.00 2.00 - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TGCCACTCTTGTCTGCATAAAGAAGCCA............................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................AGGCCTTACAGAATGCacac......................................................................................................................................................................................... 20 acac 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
...........................................................................................................................................................................................TGCCACTCTTGTCTGCATAAAGAAGCC................................................................................................................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......TAAGATGCCCTCTTTGGAACCCCCctt.................................................................................................................................................................................................................................................................................................................... 27 ctt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TAAAGAAGCCATCTCAAGGCCACAGCT............................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................TGTTAGTCGCAGGCAGGGCATCTCTGt........ 27 t 1.00 8.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................TAGCAGGAAGTGGTGACTAG........................................................................................................................................................................................................... 20 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................TGAATGTTGCTTGTGTTAGTCGCAGG...................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................TACAGAATGCCTAGTGTGGGAGGCCAC............................................................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................TGTTAGTCGCAGGCAGGGCATCTCTGAA....... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................TATGGACTTAAAAGGTGTCTGACCTAGG...................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TCTCAAGGCCACAGCTGATTAGCTAGGGCT................................................................................................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...............................................................................................................................................TACAGAATGCCTAGTGTGGGAGGCC.............................................................................................................................................................................. 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......TAAGATGCCCTCTTTGGAACCCCCATT.................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................TGACCTAGGGGACATGGCACAAAGCACAG.................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................................................TTACAGAATGCCTAGTGTGGGAGG................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................ACCCAGAAGTTAGCAGGAAGTGGTGACT............................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................TTAAAAGGTGTCTGACCTAGGGGgcat................................................................................................................................................................................................................................................................................ 27 gcat 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
................................................................................................................................................ACAGAATGCCTAGTGTGGGAGGCCACAGT......................................................................................................................................................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TGGGATCGGTGTGAAGGGCACCCAGA.................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................AGGCCTTACAGAATGCataa......................................................................................................................................................................................... 20 ataa 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.................................................................................................................................................................................................TCTTGTCTGCATAAAGAAGCCATCTCA.......................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................TGAAGGGCACCCAGAAGTTAGCAGGAA...................................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................CGCAGGCAGGGCATCTCTGAAGc..... 23 c 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
................................TTCCTATGGACTTAAAAGGTGTC............................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TGCCACTCTTGTCTGCATAAAGAAGC................................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................CGCAGGCAGGGCATCTCTGAAGAAGAC. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................TAGCAGGAAGTGGTGACTAGGCCTac..................................................................................................................................................................................................... 26 ac 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................CCTCTCTCATGTTTAGGATGAAT........................................... 23 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................TAGGATGAATGTTGCTTGTGTTAGT............................ 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................TGACCTAGGGGACATGGCACAAAGC...................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................AGCACAGTGGGAATGGGATCGGTGTG............................................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................TAGTCGCAGGCAGGGCATCTCTGAAG...... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................TCTCATGTTTAGGATGAATGTTGCTT.................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................TAAAAGGTGTCTGACCTAGGGGACATGG.............................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.....................................................................................................................................................................................................................................................TGCCACAGCTCGAAGCTCATCCTAC........................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
......................................................................................................................................................................................................................................................................................................TGAATGTTGCTTGTGTTAGTCGCAGGC..................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................CTTAAAAGGTGTCTGACCTAGGGGACATGG.............................................................................................................................................................................................................................................................................. 30 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................TAGTCGCAGGCAGGGCATCTCTGAA....... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................CACAAAGCACAGTGGGAATGGGATC..................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -

Antisense strand
TCCCTCTTAAGATGCCCTCTTTGGAACCCCCATTCCTATGGACTTAAAAGGTGTCTGACCTAGGGGACATGGCACAAAGCACAGTGGGAATGGGATCGGTGTGAAGGGCACCCAGAAGTTAGCAGGAAGTGGTGACTAGGCCTTACAGAATGCCTAGTGTGGGAGGCCACAGTGGGTGGCTCAGCAGTGCCACTCTTGTCTGCATAAAGAAGCCATCTCAAGGCCACAGCTGATTAGCTAGGGCTTGCCACAGCTCGAAGCTCATCCTACCTCTTTCCTCTCTCATGTTTAGGATGAATGTTGCTTGTGTTAGTCGCAGGCAGGGCATCTCTGAAGAAGACC
..................................................(((((((.((....)).)).)))))....((((.(((........))).)))).(((((.......(((((.((.....)).)))))..)))))......................................................................................................................................................................................................
..................................................51................................................................................................149...............................................................................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
.....AGATGCCCTCTTTGGgagg.............................................................................................................................................................................................................................................................................................................................. 19 gagg 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................CAGGCAGGGCATCTCataa........... 19 ataa 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................CATCTCTGAAGAAGtatt... 18 tatt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -