| Gene: Pcdh1 | ID: uc008eru.1_intron_1_0_chr18_38363261_r.5p | SPECIES: mm9 |
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(4) OTHER.mut |
(1) PIWI.ip |
(14) TESTES |
| CTGCTCTCGGTCAGCCCTCACGAGCTACCTGGTCCTGGACAACCCAGAAGGTATTTGTGGCAGCCTTAGAGGTCTAGTGTGTGAGAGCACCTGGGTGCTACTTTCTTGAGTAGGGGGGTCCGCGGTGGTGTTGGAACCTGTAATAACTGGGCGAGGGCAGAGGATGGATTCCAGGAGAGAATCTAAGAAACCTCAGAAAGGAGGAAAAATAGGGTAGGGGGAACAGGGTCGGGGCTCTAGAGCAGCCTCA ..................................................................................................................................((((((.((((.....((..((....))..)).)))).))))))................((((......)))).............................................. ................................................................................................................................129............................................................................208........................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCAG.......................................................................................... | 27 | 1 | 29.00 | 29.00 | 17.00 | 12.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCAGA......................................................................................... | 28 | 1 | 19.00 | 19.00 | 12.00 | 5.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACCTGTAATAACTGGGCGAGGGCAGA......................................................................................... | 26 | 1 | 11.00 | 11.00 | 5.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGC............................................................................................ | 25 | 1 | 10.00 | 10.00 | 6.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................TGGAACCTGTAATAACTGGGCGAGGGC............................................................................................ | 27 | 1 | 8.00 | 8.00 | 4.00 | 3.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCAGAG........................................................................................ | 29 | 1 | 7.00 | 7.00 | 2.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCA........................................................................................... | 26 | 1 | 5.00 | 5.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................GGAACCTGTAATAACTGGGCGAGGGCAGA......................................................................................... | 29 | 1 | 3.00 | 3.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................CCTCAGAAAGGAGGAActt......................................... | 19 | ctt | 3.00 | 0.00 | - | - | - | - | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................AGAGAATCTAAGAAACCTCAGAAAGGAGG.............................................. | 29 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TGGACAACCCAGAAGGTATTTGTGGCA............................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................TAACTGGGCGAGGGCAGAGGATGGA.................................................................................. | 25 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCAt.......................................................................................... | 27 | t | 2.00 | 5.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TAATAACTGGGCGAGGGCAGAGGA...................................................................................... | 24 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................GGAACCTGTAATAACTGGGCGAGGGC............................................................................................ | 26 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACCTGTAATAACTGGGCGAGGGCA........................................................................................... | 24 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCAGAGt....................................................................................... | 30 | t | 2.00 | 7.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACCTGTAATAACTGGGCGAGGGCAG.......................................................................................... | 25 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................TGGAACCTGTAATAACTGGGCGAGGG............................................................................................. | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................TAGAGGTCTAGTGTGTGAGAGCACCT.............................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACCTGTAATAACTGGGCGAGGGCAGAGG....................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................TCCTGGACAACCCAGAAGGTATTTGTGGC............................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................TCACGAGCTACCTGGTCCTGGACAACC.............................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TAATAACTGGGCGAGGGCAGAGGAa..................................................................................... | 25 | a | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TAATAACTGGGCGAGGGCAGAGGATG.................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................GGGGGTCCGCGtcgg.......................................................................................................................... | 15 | tcgg | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TTGGAACCTGTAATAACTGGGCGAGGcc............................................................................................ | 28 | cc | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGTAATAACTGGGCGAGGGCAGAGG....................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................TGGAACCTGTAATAACTGGGCGAGGGCAG.......................................................................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TGGACAACCCAGAAGGTATTTGTGGCAGCg......................................................................................................................................................................................... | 30 | g | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TTGGAACCTGTAATAACTGGGCGAGGGC............................................................................................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGtgca........................................................................................... | 26 | tgca | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................GGAACCTGTAATAACTGGGCGAGGGCA........................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCtaa......................................................................................... | 28 | taa | 1.00 | 10.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TAATAACTGGGCGAGGGCAGAGGAT..................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGTAATAACTGGGCGAGGGCAGAGGA...................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................GTAATAACTGGGCGAGGGCAGAGGA...................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................TGGAACCTGTAATAACTGGGCGAG............................................................................................... | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCAGAa........................................................................................ | 29 | a | 1.00 | 19.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................GGAACCTGTAATAACTGGGCGAGGG............................................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................CCGCGGTGGTGTTGGA................................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TGGTGTTGGAACCTGTAATAACTGGGCt................................................................................................. | 28 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................TGGAACCTGTAATAACTGG.................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................TGTTGGAACCTGTAATAACTGGGCGAta.............................................................................................. | 28 | ta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .............................................................................................................................TGGTGTTGGAACCTGTAATAACTGGGCGA................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GAACCTGTAATAACTGGGCGAGGGCAGt......................................................................................... | 28 | t | 1.00 | 29.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TTGGAACCTGTAATAACTGGGCGAGGGta........................................................................................... | 29 | ta | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................TGGAACCTGTAATAACTGGGCGAGGGCA........................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................GGTGTTGGAACCTGTAATAACTGGGg.................................................................................................. | 26 | g | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACCTGTAATAACTGGGCGAGGGC............................................................................................ | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACCTGTAATAACTGGGCGAGGGCAGAG........................................................................................ | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGTAATAACTGGGCGAGGGCAGAGa....................................................................................... | 25 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................ACCTGTAATAACTGGGCGAGG.............................................................................................. | 21 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................CCTCAGAAAGGAGGAActct........................................ | 20 | ctct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................................................................AGGATGGATTCCAGG........................................................................... | 15 | 16 | 0.06 | 0.06 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.06 |
| CTGCTCTCGGTCAGCCCTCACGAGCTACCTGGTCCTGGACAACCCAGAAGGTATTTGTGGCAGCCTTAGAGGTCTAGTGTGTGAGAGCACCTGGGTGCTACTTTCTTGAGTAGGGGGGTCCGCGGTGGTGTTGGAACCTGTAATAACTGGGCGAGGGCAGAGGATGGATTCCAGGAGAGAATCTAAGAAACCTCAGAAAGGAGGAAAAATAGGGTAGGGGGAACAGGGTCGGGGCTCTAGAGCAGCCTCA ..................................................................................................................................((((((.((((.....((..((....))..)).)))).))))))................((((......)))).............................................. ................................................................................................................................129............................................................................208........................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............CCTCACGAGCTACCTGGTCCTGGAC.................................................................................................................................................................................................................. | 25 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................CAGAAGGTATTTGTGGCAGCCTTAttt...................................................................................................................................................................................... | 27 | ttt | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................AACCCAGAAGGTATTTGTGGCAGCCTTA...................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .........AGCCCTCACGAGCTACCTGGTCCTtag...................................................................................................................................................................................................................... | 27 | tag | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................TGTGGCAGCCTTAGAGGTCTA.............................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................ACAACCCAGAAGGTATTTGTGGCAGCCTTA...................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................CCTGGACAACCCAGAAGGTA..................................................................................................................................................................................................... | 20 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |