| Gene: Thoc1 | ID: uc008eal.1_intron_0_0_chr18_9958245_f.5p | SPECIES: mm9 |
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(3) OTHER.mut |
(2) PIWI.ip |
(17) TESTES |
| CTCCGACGCCGGCGCTTTTCAGTTTGCCGGAGGCGCGGACGCGATTTACGGTGAGCTGAGGGGCTGAAGGCCGTGGTTCTGACCTGGCGCTATTCTTTCCCTTTCTCTCGCTGAAGGGACTGAGGGATTTTCGCCGCCGGGTCCGTTCCTGGCCCCTTCCGGGACTGACATTAAGGGAAAGGCGCACTGGCTACGCGTCTGTGGGTCCTGACCCTCCCTCCGCGGGCAAGTCCCGAGACCCCTGGTCGTT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT1() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037903(GSM510439) testes_rep4. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................CGCCGCCGGGTCCGTTCCTGGCCCCTTCCGGGACTGACATTAAGGGAAAGGC................................................................... | 52 | 1 | 95.00 | 95.00 | 95.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................AGGCGCGGACGCGATTTACGGTGAGCTGAGGGGCT......................................................................................................................................................................................... | 35 | 1 | 7.00 | 7.00 | - | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................GCTGAAGGGACTGAGGG............................................................................................................................ | 17 | 3 | 3.33 | 3.33 | - | - | - | - | 3.33 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................AGGCGCGGACGCGATTTACGG....................................................................................................................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - |
| ...........................................................................................................TCGCTGAAGGGACTGAGGGATTTTCGCC................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................AGGCGCGGACGCGATTTACGGTG..................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................TACGGTGAGCTGAGGGGCTGAAGGC................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................TTTGCCGGAGGCGCGGACGCGA.............................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................GTTTGCCGGAGGCGCGGACG................................................................................................................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................TGAAGGGACTGAGGGATTTTCGCCG.................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................AGTTTGCCGGAGGCGCGGACGCG............................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................GTTTGCCGGAGGCGCGGACGCGAT............................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................AAGTCCCGAGACCCCTGGTCGT. | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................TGACATTAAGGGAAAGGCGCACTGGC........................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................CGGACGCGATTTACGGTGAG................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................GCTGAGGGGCTGAAGGCCGTGGgtc........................................................................................................................................................................... | 25 | gtc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................................................................................................CGCTGAAGGGACTGAGGG............................................................................................................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................GTTTGCCGGAGGCGCGGACGCGATTTACG........................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TTTCAGTTTGCCGGAGGCGCG..................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ........................TGCCGGAGGCGCGGACGCGATTTAC......................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................AGGCGCGGACGCGATTTAC......................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................GCTGAAGGGACTGAGGGA........................................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ..............................................................................................................CTGAAGGGACTGAGGGAT.......................................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| CTCCGACGCCGGCGCTTTTCAGTTTGCCGGAGGCGCGGACGCGATTTACGGTGAGCTGAGGGGCTGAAGGCCGTGGTTCTGACCTGGCGCTATTCTTTCCCTTTCTCTCGCTGAAGGGACTGAGGGATTTTCGCCGCCGGGTCCGTTCCTGGCCCCTTCCGGGACTGACATTAAGGGAAAGGCGCACTGGCTACGCGTCTGTGGGTCCTGACCCTCCCTCCGCGGGCAAGTCCCGAGACCCCTGGTCGTT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT1() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037903(GSM510439) testes_rep4. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................GACCTGGCGCTATTCTTTCCCTTTCT................................................................................................................................................ | 26 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TTTGCCGGAGGCGCGGACGCGATTTA.......................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TATTCTTTCCCTTTCTCT.............................................................................................................................................. | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |