| Gene: Crb3 | ID: uc008ddw.1_intron_0_0_chr17_57201652_f | SPECIES: mm9 |
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(3) OTHER.mut |
(1) OVARY |
(2) PIWI.ip |
(1) PIWI.mut |
(14) TESTES |
| CCTCTCAGCCAGGCTCAGGTGCACAAGCCGGAAGTGCGCTCTTTGCCCAGGTGGGTGACTAAACTTTCCGGGTCACGTGAGCGGGCGGGGCGGGTGGGATCTGGAGCGACCGGGTGAAGGACGGAGACTCGGGGTTCCAGCTGGGAACCCGGGATTGGGAACCTGAGCGAAGTCCCTCTCAGACGCTGGAGTCAGGTAGGGAGGCAGGGCGCGCAGCCTGTCCTGTCCCCACCTCCTCCTTCCCTTTTCCTGGCCCAAGAATGCGGTCGGGGAGTTAATCTTTAATCTCTGACCCTTGGCGCCGAGGGCGGGGAGCGCACTCCAAGATTGGGTTGCCTGTCGCTGGGCCCCGAGCCTGAGTCCAGCCCCTCACCCTATGCTGCGCCCTCTCCCCCCCACCCCGGTCTGGTCCCCAGGTCCTGGGTCGCAGGTGCCCTCCTCGACCCAAGATGCGGTAGGAATTGGC |
Size | Perfect hit | Total Norm | Perfect Norm | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014234(GSM319958) Ovary total. (ovary) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................TGGAGCGACCGGGTGAAGGACGGAGA................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................AGAATGCGGTCGGGGAGTTAATCTTT....................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 |
| ..........................................................................................................................................................................................................................................................................................TAATCTCTGACCCTTGGCGCCGAGG............................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TCTCAGCCAGGCTCAGGTGCACAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................TGAGCGAAGTCCCTCTCAGACGCTGGA.................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................AGTTAATCTTTAATCTCTGACCCTTGGC...................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................TGAGCGAAGTCCCTCTCAGACGCTGG..................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................TGACCCTTGGCGCCGAGGGCGGGGAGC...................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................................................................................................................................................................................TCAGACGCTGGAGTCAGGTAGGGAG....................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................TGGGAACCTGAGCGAAGTCCCTCTCAGACGC........................................................................................................................................................................................................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................................................................................TGGAGCGACCGGGTGAAGGACGGAG.................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................AGAATGCGGTCGGGGAGTTAATCTT........................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................CAAGCCGGAAGTGCGCTCTTTGCCCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................CCCGGGATTGGGAACCTGAGCGAAGT..................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................GTGAAGGACGGAGACTCG............................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .....................................................................................................TGGAGCGACCGGGTGAAGGACGGAGAC.................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................GAACCCGGGATTGGGAACCTGA............................................................................................................................................................................................................................................................................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................................................GTGGGATCTGGAGCGAC.................................................................................................................................................................................................................................................................................................................................................................... | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................GGGATCTGGAGCGAC.................................................................................................................................................................................................................................................................................................................................................................... | 15 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - |
| CCTCTCAGCCAGGCTCAGGTGCACAAGCCGGAAGTGCGCTCTTTGCCCAGGTGGGTGACTAAACTTTCCGGGTCACGTGAGCGGGCGGGGCGGGTGGGATCTGGAGCGACCGGGTGAAGGACGGAGACTCGGGGTTCCAGCTGGGAACCCGGGATTGGGAACCTGAGCGAAGTCCCTCTCAGACGCTGGAGTCAGGTAGGGAGGCAGGGCGCGCAGCCTGTCCTGTCCCCACCTCCTCCTTCCCTTTTCCTGGCCCAAGAATGCGGTCGGGGAGTTAATCTTTAATCTCTGACCCTTGGCGCCGAGGGCGGGGAGCGCACTCCAAGATTGGGTTGCCTGTCGCTGGGCCCCGAGCCTGAGTCCAGCCCCTCACCCTATGCTGCGCCCTCTCCCCCCCACCCCGGTCTGGTCCCCAGGTCCTGGGTCGCAGGTGCCCTCCTCGACCCAAGATGCGGTAGGAATTGGC |
Size | Perfect hit | Total Norm | Perfect Norm | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014234(GSM319958) Ovary total. (ovary) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................................................................................................................................................................................................CGCCCTCTCCCCCtaaa....................................................................... | 17 | taaa | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTCCTCGACCCAAGATGCGGTA......... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....................CACAAGCCGGAAGTGCGCTCTTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |