| Gene: Ddr1 | ID: uc008cin.1_intron_11_0_chr17_35830863_r.5p | SPECIES: mm9 |
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(5) OTHER.mut |
(3) PIWI.ip |
(2) PIWI.mut |
(16) TESTES |
| TGGAGACCCAGCCTGCCTTGGCTTCTCCCTAGGGGCAGCTTATCTTCCTGGTAGGTTTTTTGTGTGTACTTGTCTTGGTTTGTTTGGACTTCGTGTCTTTCTTGAGACTCTTTGGAAATGCTTTTTGGGTGTGAGTTTTGAGTCAGTTGGGATGTGTTTGTAACCGGGTGGTGAGACCGGAGACTTTACTGTGACCTGACATTATCCGGGGACTTGGCAGGTATGGGGGGGGGGGTGGCGTTGGAGAGAG ....................................................................................................((..((((((.((.((((....)))).))...))))))..))...((((.((.....)).))))...................................................................................... .................................................................................................98....................................................................168................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................TGACATTATCCGGGGACTTGGCAGG............................. | 25 | 1 | 4.00 | 4.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGCTTTTTGG.......................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................TGTGACCTGACATTATCCGGGGACTTGGC................................ | 29 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................................................TGACATTATCCGGGGACTTGGCAGGT............................ | 26 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | 1.00 | - | 2.00 | - | - | - | - | - |
| ..........................................................................................................................................TGAGTCAGTTGGGATGTGTTTGTAAC...................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGCTTTTTGGG......................................................................................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................TTGGACTTCGTGTCTTTCTTGAGACTC............................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGTCAGTTGGGATGTGTTTGTAACC..................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 |
| ..........................................TCTTCCTGGTAGGTTTTTTGTGTG........................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TATCCGGGGACTTGGCAGGTATGGGG...................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGCTTTTTGGGT........................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................TGTGTACTTGTCTTGGTTTGTTTG.................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ........................................................................TCTTGGTTTGTTTGGACTTCGTGTCaaa...................................................................................................................................................... | 28 | aaa | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TTGAGTCAGTTGGGATGTGTTTGTAAC...................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................GAGTCAGTTGGGATGTGTTTGTAACCG.................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TGGTAGGTTTTTTGTGTGTACTTGTCTT.............................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................TGTGACCTGACATTATCCGGGGgca.................................... | 25 | gca | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................GGAGACTTTACTGTGACCTGACATTATC............................................ | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TGAGACCGGAGACTTTACTGTGACCTG.................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................TGACATTATCCGGGGACTTGGCAGGg............................ | 26 | g | 1.00 | 4.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TTTTGGGTGTGAGTTTTGAGTCAat....................................................................................................... | 25 | at | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGCTTgg............................................................................................................................. | 23 | gg | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGCTTTTTGtg......................................................................................................................... | 27 | tg | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TATCCGGGGACTTGGCAGGTATGGG....................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TGGTGAGACCGGAGACTTTACTGTGACCTGACA................................................. | 33 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGCTTTTgggt......................................................................................................................... | 27 | gggt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TCTTGGTTTGTTTGGACTTCGTGTC......................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................TGTTTGGACTTCGTGTCTTTCTTGAta............................................................................................................................................... | 27 | ta | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................TGGGATGTGTTTGTAACCGGGTGGTG............................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................TGACATTATCCGGGGACTTGGCAGGTA........................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGCTTTTTGGGTG....................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGCTTTTTG........................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..........................................................................................................................................................................................TACTGTGACCTGACATTATCCGGGGAC..................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................GGGGACTTGGCAGGTcca......................... | 18 | cca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................................TGAGACTCTTTGGAAATGC................................................................................................................................. | 19 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................TACTGTGACCTGACATTATCCGGGGACTT................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................TGTCTTGGTTTGTTTGG................................................................................................................................................................... | 17 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - |
| TGGAGACCCAGCCTGCCTTGGCTTCTCCCTAGGGGCAGCTTATCTTCCTGGTAGGTTTTTTGTGTGTACTTGTCTTGGTTTGTTTGGACTTCGTGTCTTTCTTGAGACTCTTTGGAAATGCTTTTTGGGTGTGAGTTTTGAGTCAGTTGGGATGTGTTTGTAACCGGGTGGTGAGACCGGAGACTTTACTGTGACCTGACATTATCCGGGGACTTGGCAGGTATGGGGGGGGGGGTGGCGTTGGAGAGAG ....................................................................................................((..((((((.((.((((....)))).))...))))))..))...((((.((.....)).))))...................................................................................... .................................................................................................98....................................................................168................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................TCTTTCTTGAGACTCTTTGGA...................................................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................GACCTGACATTATCCGGGGACTTGGCAGG............................. | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |